Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10673
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41025-3|AAA82348.1|  244|Caenorhabditis elegans Hypothetical pr...    33   0.15 
U53140-1|AAA96101.1|  276|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF125442-11|AAD12791.1|  624|Caenorhabditis elegans Hypothetical...    28   7.6  

>U41025-3|AAA82348.1|  244|Caenorhabditis elegans Hypothetical
           protein C01C4.2 protein.
          Length = 244

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
 Frame = +3

Query: 198 KFLLWIS*SRNVGYQPHGNDCEMQEVAIEKNVNTLVTTARKRSADNSGYPQSKRFREEVM 377
           K   ++   R + ++ + N C    +A     + L    R   ++N+GY +  +F E   
Sbjct: 31  KLCAYVGAYRKISFEVNRNLCRSLGLAEANYADALTNRFRVSYSNNTGYVEMSKFIEYRT 90

Query: 378 VPTTTN-----SNPCLLRPTHNNPD 437
           +P+T N     S P +  PT+ +P+
Sbjct: 91  LPSTPNTIRSPSTPPIFYPTYPSPN 115


>U53140-1|AAA96101.1|  276|Caenorhabditis elegans Hypothetical
           protein ZC266.2 protein.
          Length = 276

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 711 QFTSQNITLTSQRRSTV*ITIKMSAMYVPEKTFQYI 604
           +F+S N+T++  R S   +TI  S+ Y   K  QY+
Sbjct: 140 KFSSANVTISKSRTSNGEVTISSSSSYSRSKRRQYL 175


>AF125442-11|AAD12791.1|  624|Caenorhabditis elegans Hypothetical
           protein H04M03.1 protein.
          Length = 624

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 234 GYQPHGNDCEMQEVAIEKNVNTLVTTARKRSADNSGYPQSKRFREEVMVP 383
           G+ P  ND EM+E+   KN+  L+T         S  PQS ++  +V VP
Sbjct: 366 GFSPE-ND-EMEELGSPKNLANLLTGVISEYQIQSFDPQSTKWASDVGVP 413


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,802,377
Number of Sequences: 27780
Number of extensions: 401022
Number of successful extensions: 1049
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)