Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10673
         (712 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g30843.1 68416.m03970 hypothetical protein                          30   1.3  
At2g33585.1 68415.m04116 expressed protein                             29   2.3  
At3g57940.1 68416.m06458 expressed protein contains Pfam profile...    29   3.0  
At3g29220.1 68416.m03665 hypothetical protein                          28   5.3  
At3g26920.1 68416.m03368 F-box family protein contains F-box dom...    28   5.3  
At5g33303.1 68418.m03951 hypothetical protein                          27   9.3  
At2g04080.1 68415.m00391 MATE efflux family protein similar to h...    27   9.3  

>At3g30843.1 68416.m03970 hypothetical protein
          Length = 310

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -1

Query: 229 FLLHEIHS--KNLWICVHCRIDLVGWRHRKSEQVEQHQNYI*HPEAKIQWYWLALYELSS 56
           FL H +H   KN +I     +DL  W+  K      HQ Y+  P+A+ +W  L   +  S
Sbjct: 56  FLRHHLHDNLKNEYITREDPVDL--WQSLKDRF--DHQKYVILPKARHEWLNLRFLDYKS 111

Query: 55  VYELLKTLF 29
           V +    +F
Sbjct: 112 VGDYNSAMF 120


>At2g33585.1 68415.m04116 expressed protein
          Length = 193

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 483 NEASANENKIRYLHFICR-SSKKEKHWT*DTRDCEIKTKFR--RYIGKSFLEHTWR 641
           ++A+AN+N+I   +F C  SSK   H +      EI+   R  R +G   +  +WR
Sbjct: 48  HQANANQNQIACFYFSCNFSSKSNHHQSQAIVREEIQKNLRPVRIVGHQSMASSWR 103


>At3g57940.1 68416.m06458 expressed protein contains Pfam profile
           PF05127: Putative ATPase (DUF699)
          Length = 1024

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 1/112 (0%)
 Frame = +1

Query: 88  IESWLQGAR-YNFDAVRPAPICGDANQPGQCDNVHISTNFYYGFHEVETSGINHMATIVR 264
           IESWL G    +     P P C  +  P QCD  +++ +  + +H+     +  M  +  
Sbjct: 482 IESWLNGLLCLDVATCLPNPACHPS--PSQCDLYYVNRDTLFSYHKDSELFLQRMMAL-- 537

Query: 265 CRKSQLKRT*TPL*PQLEKEVLITAAIHRASVFEKRLWCQQPPTPTPVCFVQ 420
           C  S  K +   L      ++L  A  H   V    +   Q   P  +C +Q
Sbjct: 538 CVSSHYKNSPNDL------QLLADAPAHHLFVLLGPVDESQNKIPDILCVIQ 583


>At3g29220.1 68416.m03665 hypothetical protein
          Length = 197

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -1

Query: 229 FLLHEIHS--KNLWICVHCRIDLVGWRHRKSEQVEQHQNYI*HPEAKIQWYWLALYELSS 56
           FL H +H   KN +I     +DL   R    ++ + HQ Y+  P+AK +W  L   +  S
Sbjct: 56  FLHHHLHDHLKNEYITREDNVDL---RQSLKDRFD-HQKYVILPKAKHEWLNLRFLDYKS 111

Query: 55  V 53
           +
Sbjct: 112 I 112


>At3g26920.1 68416.m03368 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 565

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 426 NNP-DISRCLMVHMI*YLWFNEASANENKIRYLHFICRSSKKEKHWT 563
           N P ++  CL++H+  ++W       EN+I    +I R++++ K  T
Sbjct: 211 NEPKNVPECLLLHLETFVWTCYEGKLENEIELAKYILRNARRLKKAT 257


>At5g33303.1 68418.m03951 hypothetical protein
          Length = 336

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -1

Query: 229 FLLHEIHS--KNLWICVHCRIDLVGWRHRKSEQVEQHQNYI*HPEAKIQWYWLALYELSS 56
           FL H +H   KN ++ V  +   + W   K      HQ  +  P+A+  W  L L +  S
Sbjct: 52  FLRHHLHEDLKNEYLNV--KDPQILWNDLKDRY--DHQKTVILPKARYDWTHLRLQDYKS 107

Query: 55  VYELLKTLF 29
           V E    LF
Sbjct: 108 VSEYNSALF 116


>At2g04080.1 68415.m00391 MATE efflux family protein similar to
           hypothetical protein GB:AAC27412; contains Pfam profile
           PF01554: Uncharacterized membrane protein family
          Length = 476

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = -3

Query: 449 TTRYIWIVVCWTKQTGVGVGGCWHHNLFSKTLALWIAAVISTS----FSSC 309
           TT    I VCWT    +G+G   +    + +L+ W  AVI +     FSSC
Sbjct: 186 TTLLFHIAVCWTLVFALGLGS--NGAAIAISLSFWFYAVILSCHVRFFSSC 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,524,632
Number of Sequences: 28952
Number of extensions: 362029
Number of successful extensions: 962
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)