Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10671X
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006768-3|AAK70665.1|  246|Caenorhabditis elegans Hypothetical ...    30   1.1  
AC006768-2|AAF60574.1|  309|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z50006-3|CAA90299.1|  334|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin fam...    27   9.9  
DQ178635-1|ABD75714.1|  361|Caenorhabditis elegans tetraspanin f...    27   9.9  

>AC006768-3|AAK70665.1|  246|Caenorhabditis elegans Hypothetical
           protein Y45G12B.2b protein.
          Length = 246

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -2

Query: 577 YIIYFSKLLIITIITVCYSAYYTGSFS*KPDTTKISDDIIRLTIDSSGL 431
           ++I+ + L +ITII V   A Y+G  S  P    +++  IR+ ++ S L
Sbjct: 195 FVIFLAVLALITIIMVMKRAGYSGEHSSDPLFDPMANPNIRVAVEDSRL 243


>AC006768-2|AAF60574.1|  309|Caenorhabditis elegans Hypothetical
           protein Y45G12B.2a protein.
          Length = 309

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -2

Query: 577 YIIYFSKLLIITIITVCYSAYYTGSFS*KPDTTKISDDIIRLTIDSSGL 431
           ++I+ + L +ITII V   A Y+G  S  P    +++  IR+ ++ S L
Sbjct: 258 FVIFLAVLALITIIMVMKRAGYSGEHSSDPLFDPMANPNIRVAVEDSRL 306


>Z50006-3|CAA90299.1|  334|Caenorhabditis elegans Hypothetical
           protein T07C5.2 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 258 NILQAGFDNIL-IGSRCQIYLNHFQPSNIYF*IVNQL 365
           N+    +DNI+     CQ Y +  QPS +Y  ++NQL
Sbjct: 297 NVANQTYDNIIKYVCLCQYYHSDMQPSKLYQSVLNQL 333


>U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin family
           protein 18 protein.
          Length = 473

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 464 IVAYFCSVRFSAETTSVVCTIAHSNYCNY 550
           +++Y  S+R S+E  + + TI  +NY NY
Sbjct: 116 VLSYTLSLRISSEYDTKMTTILMTNYLNY 144


>DQ178635-1|ABD75714.1|  361|Caenorhabditis elegans tetraspanin
           family protein protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 464 IVAYFCSVRFSAETTSVVCTIAHSNYCNY 550
           +++Y  S+R S+E  + + TI  +NY NY
Sbjct: 4   VLSYTLSLRISSEYDTKMTTILMTNYLNY 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,499,087
Number of Sequences: 27780
Number of extensions: 256475
Number of successful extensions: 405
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)