Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10663X
(526 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 165 4e-42
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 165 4e-42
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 38 0.001
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 27 1.7
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 25 6.9
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 6.9
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 25 9.1
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.1
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 165 bits (401), Expect = 4e-42
Identities = 80/140 (57%), Positives = 103/140 (73%)
Frame = +1
Query: 28 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 207
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 208 DIRVTVKGGGHVAQV*LSDKLFRRL*SPSTRKYVDEASKKEIKDILVQYDRSLLVADPRR 387
DIRV V GGGHV+Q+ + + +K+VDE SK E+K L+ YDR+LLVADPRR
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120
Query: 388 CEPKKFGGPXARARYQKSYR 447
EPKKFGG ARAR QKSYR
Sbjct: 121 MEPKKFGGHGARARQQKSYR 140
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 165 bits (401), Expect = 4e-42
Identities = 80/140 (57%), Positives = 103/140 (73%)
Frame = +1
Query: 28 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 207
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 208 DIRVTVKGGGHVAQV*LSDKLFRRL*SPSTRKYVDEASKKEIKDILVQYDRSLLVADPRR 387
DIRV V GGGHV+Q+ + + +K+VDE SK E+K L+ YDR+LLVADPRR
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120
Query: 388 CEPKKFGGPXARARYQKSYR 447
EPKKFGG ARAR QKSYR
Sbjct: 121 MEPKKFGGHGARARQQKSYR 140
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 37.9 bits (84), Expect = 0.001
Identities = 36/128 (28%), Positives = 55/128 (42%)
Frame = +1
Query: 49 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 228
G++K++ A G G VNG P D+ R++ K L + + ++ TV
Sbjct: 12 GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70
Query: 229 GGGHVAQV*LSDKLFRRL*SPSTRKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 408
GGG Q S + + S + E S K+ V D ++ D R+ E KK G
Sbjct: 71 GGGPTGQ---SGAVHAAI---SKSLILQEPSLKQ-----VIKDTHCVLNDKRKVERKKTG 119
Query: 409 GPXARARY 432
P AR +Y
Sbjct: 120 QPKARKKY 127
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 27.1 bits (57), Expect = 1.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 428 DTRNLTVKPSTKPSGGIVAAVCCH 499
D N+ VKP+ P+ + +CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 25.0 bits (52), Expect = 6.9
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -3
Query: 314 SSTYFLVEGDQSLRNSLSDS*TCAT*PPPLTVTLMSTIENFSLPSK 177
SS FL + ++ +S+++ PP V T+ NFS P +
Sbjct: 698 SSAVFLSKSPENYLSSINNGHHALNDNPPSQVNFSETLVNFSQPPR 743
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.0 bits (52), Expect = 6.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 115 RLHAAFHDHACNTQLRWRFS 56
RLH+ F++H C + L+ FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 24.6 bits (51), Expect = 9.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 154 TAAVWAQPSPMDARLHAAFHDHACNTQLR 68
T +V + P AR AA H +A +TQLR
Sbjct: 375 TPSVKPEMFPKTARPFAAIHANASSTQLR 403
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 24.6 bits (51), Expect = 9.1
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -2
Query: 150 QQSGLNQVQWTPVYTQHSMTTLAIRNCGGGFLTSEYLDGLDGLT 19
Q +G Q+ W V T L + N ++YLD +D T
Sbjct: 29 QTNGEEQITWNVVSTDEPSAALYLTNFAVYPTVTQYLDTVDTST 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,933
Number of Sequences: 5004
Number of extensions: 42236
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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