Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10663X
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 175 1e-44
11_01_0155 - 1287003-1287452 175 1e-44
03_06_0097 - 31632238-31632525,31633386-31633769 30 0.99
07_03_0227 - 15398371-15398925 29 1.7
06_03_0062 + 16116893-16117029,16117472-16117760 29 1.7
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828... 29 2.3
07_01_0042 - 334417-334431,334563-334688,334852-335136,335220-33... 29 2.3
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 28 4.0
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 28 5.3
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 28 5.3
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 5.3
01_06_0683 - 31173763-31174635,31175146-31175436 28 5.3
02_05_0156 + 26341904-26342801,26343469-26344148 27 7.0
09_01_0025 - 441528-444284 27 9.2
>12_01_0152 - 1168928-1169377
Length = 149
Score = 175 bits (427), Expect = 1e-44
Identities = 81/143 (56%), Positives = 105/143 (73%)
Frame = +1
Query: 19 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 198
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 199 SMVDIRVTVKGGGHVAQV*LSDKLFRRL*SPSTRKYVDEASKKEIKDILVQYDRSLLVAD 378
+D+R+ V+GGG +Q+ + + +KYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 379 PRRCEPKKFGGPXARARYQKSYR 447
PRRCEPKKFGG ARAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149
>11_01_0155 - 1287003-1287452
Length = 149
Score = 175 bits (427), Expect = 1e-44
Identities = 81/143 (56%), Positives = 105/143 (73%)
Frame = +1
Query: 19 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 198
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 199 SMVDIRVTVKGGGHVAQV*LSDKLFRRL*SPSTRKYVDEASKKEIKDILVQYDRSLLVAD 378
+D+R+ V+GGG +Q+ + + +KYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 379 PRRCEPKKFGGPXARARYQKSYR 447
PRRCEPKKFGG ARAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 30.3 bits (65), Expect = 0.99
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +1
Query: 31 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 201
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 202 MVDIRVTVKGGG 237
D+ V V GGG
Sbjct: 153 SYDVFVKVHGGG 164
>07_03_0227 - 15398371-15398925
Length = 184
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -1
Query: 169 VPEVCTAAVWAQPSPMDARLHAAFH--DHACNTQLRWRF 59
+P +C A W P+ A H FH C+ + RW +
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61
>06_03_0062 + 16116893-16117029,16117472-16117760
Length = 141
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 124 MDARLHAAFHDHA--CNTQLRWRFSYVRILGRPGW 26
+DARL A +HA N + RWR LG+ GW
Sbjct: 26 LDARLWAVESEHARVVNPEQRWRARSTGWLGKKGW 60
>07_03_1483 +
26881032-26882035,26882130-26882204,26882324-26882861,
26883999-26884895,26885178-26885327,26885459-26885791,
26886501-26886695,26887805-26887918
Length = 1101
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 143 DCCST-NFRNLSFCSARKNSLWSTSE*QSRVVVM 241
+CC+ + +LS C KN++W S S ++V+
Sbjct: 725 ECCNQLRYLSLSNCDVGKNAIWKISAPNSNIIVL 758
>07_01_0042 -
334417-334431,334563-334688,334852-335136,335220-335368,
336239-336536,337030-337131,337245-337613,337973-338115,
338334-338518,339246-339475,339734-339821,340158-340253,
340397-340512,340604-340852,340950-341175,341411-341622
Length = 962
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 225 QGWWSCSTSLAIRQAISKALIAFYQEICRRSL 320
QGWW LA+ I F+ E+CR +
Sbjct: 485 QGWWVFGLDLALHGDIDVYQFKFFAELCRNKI 516
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 123 WTPVYTQHSMTTLAIRNCGGGFLTSEYLD 37
W V T H +T +A R+C G F ++LD
Sbjct: 18 WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 11 RQDVSPSRPSKYSDVRKPPPQLRIAS 88
R+ S S P K SD R PPP+ R S
Sbjct: 33 RRSTSRSPPPKKSDSRSPPPRRRSTS 58
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +1
Query: 49 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 228
G++K + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 229 GGGHVAQV 252
GGG QV
Sbjct: 354 GGGVSGQV 361
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 112 NGRPLDLVEPRLLQYKLQEPILLL 183
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>01_06_0683 - 31173763-31174635,31175146-31175436
Length = 387
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +2
Query: 26 PSRPSKYSDVRKPPPQLRIASVVMECCV*TGVHWTWLSPDCCSTNFRNLSFCSARKNSLW 205
PS+P+K D PP Q +++SV VH +P + R C K W
Sbjct: 224 PSKPAKKKDAPAPPAQAQLSSV--------PVHSGGSAPAAAAGEGRRCLHCETDKTPQW 275
Query: 206 ST 211
T
Sbjct: 276 RT 277
>02_05_0156 + 26341904-26342801,26343469-26344148
Length = 525
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 466 WFR*RLNGKISGIWHGH 416
WFR R G I GIW+ H
Sbjct: 155 WFRGRRRGLIMGIWNAH 171
>09_01_0025 - 441528-444284
Length = 918
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 332 ISFFEASSTYFLVEGD-QSLRNSLSDS*TCAT*PPPLTVTLMSTI 201
+ +F +S+ FL D SL +SLSDS T PPP L++TI
Sbjct: 105 LRYFLSSTASFLPTPDLHSLSSSLSDSTTFR--PPPPPSNLLATI 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,759,864
Number of Sequences: 37544
Number of extensions: 329578
Number of successful extensions: 884
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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