Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10663X
         (526 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             132   1e-31
SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_59266| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)                  27   7.2  
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)                     27   9.5  
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        27   9.5  
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.5  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  132 bits (320), Expect = 1e-31
 Identities = 65/97 (67%), Positives = 76/97 (78%)
 Frame = +1

Query: 157 KLQEPILLLGKEKFSMVDIRVTVKGGGHVAQV*LSDKLFRRL*SPSTRKYVDEASKKEIK 336
           K++EPILLLGKE+F  VDIRV VKGGGH +++    +   +      +KYVDE SKKEI+
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISKSLVAYYQKYVDEVSKKEIR 70

Query: 337 DILVQYDRSLLVADPRRCEPKKFGGPXARARYQKSYR 447
           DILVQYDRSLLVADPRR E KKFGGP AR+RYQKSYR
Sbjct: 71  DILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKSYR 107


>SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 5   CRRQDVSPSRPSKYSDVRKPPPQLRIASVVMECCV*TGVHW 127
           C R+D+  +R   Y     P  Q +   +  E CV TG+ W
Sbjct: 228 CCRKDLQENRQCGYGARSVPTSQAKENGIFTEGCVKTGIAW 268


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -2

Query: 201 REFFLAEQKDRFLKFVLQQSGLNQ--VQWTP 115
           R F   + KDR+LK  L++ G  Q   QW P
Sbjct: 12  RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


>SB_59266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 678

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 304 ISW*KAIRAFEIACLIAKLVLHDHHP*LS 218
           +SW KA   + I   I+ L+LHD+ P LS
Sbjct: 470 VSWKKARPTYTITVQISSLMLHDNSPILS 498


>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
          Length = 1093

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 165 LKFVLQQSGLNQVQWTPVYT 106
           LK     SG+N++ W PVYT
Sbjct: 198 LKIQAHTSGVNRLDWNPVYT 217


>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
          Length = 873

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 128 TWLSPDCCSTNFRNLSFCSARKNSLWSTS 214
           TW+ P C S+NF + S  ++  NS+ STS
Sbjct: 716 TWICPCCGSSNFSSGSIFTSSSNSI-STS 743


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 298 RKYVDEASKKEIKDILVQYDRSLLVADPRRCE 393
           +KY+D   +KE     +Q+ + +LV+  R CE
Sbjct: 58  QKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 445 GKISGIWHGHXDHRTSWARSDAGQP 371
           G+++G W    ++R  W + D G+P
Sbjct: 864 GRMAGCWAARHNNRKQWLQVDLGKP 888


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,193,570
Number of Sequences: 59808
Number of extensions: 346824
Number of successful extensions: 736
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)