Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10663X
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   190   5e-49
Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical pr...    32   0.29 
Z68341-1|CAA92764.1|  258|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    27   6.2  
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        27   6.2  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  190 bits (463), Expect = 5e-49
 Identities = 88/140 (62%), Positives = 111/140 (79%)
 Frame = +1

Query: 28  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 207
           +Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F  V
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64

Query: 208 DIRVTVKGGGHVAQV*LSDKLFRRL*SPSTRKYVDEASKKEIKDILVQYDRSLLVADPRR 387
           DIR+ V GGGHVAQ+    +   +       KYVDE SK+E+K+I   YD+SLLVADPRR
Sbjct: 65  DIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRR 124

Query: 388 CEPKKFGGPXARARYQKSYR 447
            E KKFGGP ARARYQKSYR
Sbjct: 125 RESKKFGGPGARARYQKSYR 144


>Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical
           protein BE10.4 protein.
          Length = 301

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 295 TRKYVDEASKKEIKDILVQYDRSLLVADPRRCE 393
           T  + DE  +KE+ D+  QYDRS+ + D  R E
Sbjct: 148 TAYFCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180


>Z68341-1|CAA92764.1|  258|Caenorhabditis elegans Hypothetical
           protein F01G4.2 protein.
          Length = 258

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 141 QTAAVQTSGTYPFARQGKILYGRHQSDSQG 230
           QT  V   GT+   R G  L G H+ D+ G
Sbjct: 113 QTIDVNVLGTFNVIRHGVALMGEHEKDANG 142


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 237 TTTLDCHSDVDHREFFLAEQKD-RF--LKFVLQQSG 139
           TT LDC  +  H EF+ AE  D RF  + F+ +Q G
Sbjct: 146 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 181


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 237 TTTLDCHSDVDHREFFLAEQKD-RF--LKFVLQQSG 139
           TT LDC  +  H EF+ AE  D RF  + F+ +Q G
Sbjct: 21  TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,445,375
Number of Sequences: 27780
Number of extensions: 248886
Number of successful extensions: 589
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)