Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10663X
         (526 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   182   1e-46
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           182   1e-46
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   182   1e-46
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con...    36   0.013
At4g16340.1 68417.m02476 adapter protein SPIKE1 (SPK1) One model...    30   0.83 
At3g27180.1 68416.m03399 expressed protein                             28   3.3  
At4g11090.1 68417.m01801 expressed protein other hypothetical pr...    27   5.8  

>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  182 bits (444), Expect = 1e-46
 Identities = 85/145 (58%), Positives = 112/145 (77%)
 Frame = +1

Query: 13  ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 192
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61

Query: 193 KFSMVDIRVTVKGGGHVAQV*LSDKLFRRL*SPSTRKYVDEASKKEIKDILVQYDRSLLV 372
           +F+ V++R+ V GGGH +QV    +   +      +KYVDE SKKEIKDILV+YDR+LLV
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 121

Query: 373 ADPRRCEPKKFGGPXARARYQKSYR 447
           ADPRRCEPKKFGG  AR+RYQKSYR
Sbjct: 122 ADPRRCEPKKFGGRGARSRYQKSYR 146


>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  182 bits (443), Expect = 1e-46
 Identities = 84/145 (57%), Positives = 112/145 (77%)
 Frame = +1

Query: 13  ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 192
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61

Query: 193 KFSMVDIRVTVKGGGHVAQV*LSDKLFRRL*SPSTRKYVDEASKKEIKDILVQYDRSLLV 372
           +F+ V++R+ V GGGH +QV    +   +      +KYVDE SKKEIKDILV+YDR+LLV
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 121

Query: 373 ADPRRCEPKKFGGPXARARYQKSYR 447
           ADPRRCEPKKFGG  AR+RYQKSYR
Sbjct: 122 ADPRRCEPKKFGGRGARSRYQKSYR 146


>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  182 bits (443), Expect = 1e-46
 Identities = 83/139 (59%), Positives = 110/139 (79%)
 Frame = +1

Query: 31  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 210
           ++VQ FGRKKTATAV YCKRG GM+++NG P++L +P +L++K+ EP+LLLGK +F+ VD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 211 IRVTVKGGGHVAQV*LSDKLFRRL*SPSTRKYVDEASKKEIKDILVQYDRSLLVADPRRC 390
           +R+   GGG+ ++V    +   +      +KYVDE SKKEIKDIL++YDR+LLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 391 EPKKFGGPXARARYQKSYR 447
           E KKFGGP ARAR+QKSYR
Sbjct: 128 ESKKFGGPGARARFQKSYR 146


>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
           contains Pfam profile PF00380: ribosomal protein S9
          Length = 430

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 22/68 (32%), Positives = 34/68 (50%)
 Frame = +1

Query: 49  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 228
           GR+K + A  + + G G  +VN +  D+  P +L ++      L   +     DI+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368

Query: 229 GGGHVAQV 252
           GGG   QV
Sbjct: 369 GGGTTGQV 376


>At4g16340.1 68417.m02476 adapter protein SPIKE1 (SPK1) One model
            reflects the alignment of a full-length cDNA sequence
            gi:18496702.  There are multiple frame shifts in the gene
            model resulting in a truncated protein.  The alternate
            model includes modifications in exons 14, 17 and 29 to
            compensate for frame shifts and maximize the protein
            length.  It is not based on EST data.  adapter protein
            SPIKE1 [Arabidopsis thaliana] GI:18496703
          Length = 1757

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 21/63 (33%), Positives = 33/63 (52%)
 Frame = +1

Query: 148  LQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQV*LSDKLFRRL*SPSTRKYVDEASKK 327
            L +KL E  L+L + K +   I       G V++   S K   RL SP+   Y+ EAS++
Sbjct: 973  LYFKLMEECLILFEHKKAADSILGGNNSRGPVSEGAGSPKYSERL-SPAINNYLSEASRQ 1031

Query: 328  EIK 336
            E++
Sbjct: 1032 EVR 1034


>At3g27180.1 68416.m03399 expressed protein
          Length = 518

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 234 WSCSTSLAIRQAISKALIAFYQE 302
           W C   LA+R +   ALI  YQE
Sbjct: 96  WRCRAKLAVRGSSDNALIGLYQE 118


>At4g11090.1 68417.m01801 expressed protein other hypothetical
           proteins - Arabidopsis thaliana
          Length = 432

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 119 VHWTWLSPDCCSTNFRNLSFCSARKNSLWS 208
           ++W W   DC    F +L F    +N  W+
Sbjct: 121 LNWKWKPNDCSLPRFDSLRFLQLMRNKSWA 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,920,617
Number of Sequences: 28952
Number of extensions: 238437
Number of successful extensions: 660
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)