Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10657X
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    64   1e-11
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.5  
SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S...    26   3.4  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   7.9  

>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1009

 Score = 64.1 bits (149), Expect = 1e-11
 Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
 Frame = +1

Query: 13   FRKPLILMTPKSLLRHPECKSSFDDMKEGTNFKRVIPEE--GPASENPQNVRKLAFCSGR 186
            FRKPL++   KSLLRHP  +S+ D+  E   FK ++ EE  G +   P+ + KL  CSG+
Sbjct: 839  FRKPLVIFFSKSLLRHPAARSTIDEFDEKHGFKLILEEEEHGKSILPPEKIEKLIICSGQ 898

Query: 187  VYYDLLKQRRDKGLEKDIAI 246
            V+  L K R +  ++ +IAI
Sbjct: 899  VWVALSKAREENKID-NIAI 917



 Score = 58.0 bits (134), Expect = 9e-10
 Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
 Frame = +3

Query: 255  EQISPFPYDQVKAEIAKYPNA-QLVWSQEEHKNMGSWSYIEPRFRTLLQN 401
            EQ+ PF + Q+ A I++YPN  +++W QEE  N G+W+Y+EPR  T+L++
Sbjct: 921  EQLHPFGWKQMAANISQYPNLKEIIWCQEEPLNAGAWTYMEPRIYTILKH 970


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = +3

Query: 273 PYDQVKAEIAKYPNAQLVWSQEEHKNMGSWSYIEPRFRTLLQNQKQIRAKSQSK 434
           PY Q   +IA+  N    +S + HK++ ++S     FR++LQ + Q+  +++ K
Sbjct: 78  PYAQA-FDIAEIVNLIREYSHKYHKHIPAFSAYIVAFRSVLQPEVQVSPEARHK 130


>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 207

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 349 TWARGATSSRASAPSCRTRSRLGQSPNRRGVAG*ANYSAETRVRKV 486
           TWA+   + R +        R     NR+G+A    +  ET ++KV
Sbjct: 37  TWAKAKEAQRFAEKLITMAKRANPQNNRKGLAEGMVFEKETTLKKV 82


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 332 APHELSVRVLRDLGLHLVVRE 270
           APH  S+ ++ D  LHL V+E
Sbjct: 440 APHRRSILIVGDGSLHLTVQE 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,016
Number of Sequences: 5004
Number of extensions: 36896
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)