Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10657X
(572 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898... 79 3e-15
07_03_1795 + 29603694-29605208,29605423-29605649,29605739-296060... 75 3e-14
08_01_1003 + 10174556-10174951 31 0.49
11_04_0325 + 16395124-16396794 29 2.6
11_03_0034 - 9124414-9124599,9124677-9124769,9125022-9125098,912... 29 3.5
09_06_0150 - 21225086-21225511,21225775-21226125,21227180-212277... 28 6.1
08_02_1322 + 26131395-26131599,26132382-26132468,26133119-261333... 28 6.1
08_02_0702 - 20179838-20180040,20180397-20180464,20180642-201809... 28 6.1
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434... 28 6.1
07_03_1110 + 24047851-24047871,24047960-24048352,24048447-24048488 27 8.0
01_06_1557 - 38231826-38233391 27 8.0
>04_03_0741 + 19187333-19188868,19189264-19189490,19189578-19189899,
19190311-19190399,19190882-19191128,19191756-19191884,
19191967-19192182,19192256-19192379,19192857-19193095
Length = 1042
Score = 78.6 bits (185), Expect = 3e-15
Identities = 40/88 (45%), Positives = 61/88 (69%), Gaps = 10/88 (11%)
Frame = +1
Query: 13 FRKPLILMTPKSLLRHPECKSS---FDDM-------KEGTNFKRVIPEEGPASENPQNVR 162
FRKPLI+M+PK+LLRH +CKS+ FDD+ K+GT FKR+I ++ + + ++
Sbjct: 855 FRKPLIVMSPKNLLRHKDCKSNLSEFDDLAGHPGFDKQGTRFKRLIKDQNNHKDLEEGIK 914
Query: 163 KLAFCSGRVYYDLLKQRRDKGLEKDIAI 246
+L CSG+VYY+L ++RR K + D+AI
Sbjct: 915 RLVLCSGKVYYELDEERRKKERD-DVAI 941
Score = 72.5 bits (170), Expect = 2e-13
Identities = 30/63 (47%), Positives = 42/63 (66%)
Frame = +3
Query: 210 ETRQGTRKGHCYC*TEQISPFPYDQVKAEIAKYPNAQLVWSQEEHKNMGSWSYIEPRFRT 389
E R+ R C EQ+ PFPYD ++ E+ +YPNA++VW QEE NMG++SYI PR T
Sbjct: 930 ERRKKERDDVAICRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEPMNMGAYSYINPRLLT 989
Query: 390 LLQ 398
++
Sbjct: 990 AMR 992
>07_03_1795 + 29603694-29605208,29605423-29605649,29605739-29606071,
29606229-29606475,29606948-29607076,29607161-29607376,
29607454-29607577,29608377-29608612
Length = 1008
Score = 75.4 bits (177), Expect = 3e-14
Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 10/88 (11%)
Frame = +1
Query: 13 FRKPLILMTPKSLLRHPECKSS---FDDM-------KEGTNFKRVIPEEGPASENPQNVR 162
FRKPLI+M PK+LLRH +CKS+ FDD+ K+GT FKR+I + + + ++
Sbjct: 822 FRKPLIVMAPKNLLRHKDCKSNLSEFDDVEGHPGFDKQGTRFKRLIKDRNDHKQVEEGIK 881
Query: 163 KLAFCSGRVYYDLLKQRRDKGLEKDIAI 246
+L CSG+VYY+L ++R+ K D+AI
Sbjct: 882 RLVLCSGKVYYELDEERK-KTERSDVAI 908
Score = 69.7 bits (163), Expect = 2e-12
Identities = 28/57 (49%), Positives = 39/57 (68%)
Frame = +3
Query: 210 ETRQGTRKGHCYC*TEQISPFPYDQVKAEIAKYPNAQLVWSQEEHKNMGSWSYIEPR 380
E ++ R C EQ+ PFPYD ++ E+ +YPNA++VW QEE NMG++SYI PR
Sbjct: 897 ERKKTERSDVAICRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEPMNMGAYSYISPR 953
>08_01_1003 + 10174556-10174951
Length = 131
Score = 31.5 bits (68), Expect = 0.49
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 565 RAGRWRGGCGATVIANGAR 509
R GRWRGGC +ANG R
Sbjct: 6 RPGRWRGGCERRSMANGGR 24
>11_04_0325 + 16395124-16396794
Length = 556
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -1
Query: 335 LAPHELSVRVLRDLGLHLVVRERRDLLSLAIA 240
L HE S R LRDL + ++ E RD L A+A
Sbjct: 138 LVSHEFSARALRDLEVTVLEAEARDRLVPALA 169
>11_03_0034 -
9124414-9124599,9124677-9124769,9125022-9125098,
9125725-9126401,9126423-9126653,9127760-9127826,
9127843-9127993
Length = 493
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 10 PFRKPLILMTPKSLLRHPECKSSFDDMKEGTNFKRVIP 123
P +K ++ P + PE FDD+KE T+ + +P
Sbjct: 69 PLKKGKHMLLPDPATKEPEPDYPFDDLKENTSCRLHVP 106
>09_06_0150 -
21225086-21225511,21225775-21226125,21227180-21227718,
21227813-21227929,21228038-21228290
Length = 561
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 325 CGARRSTRTWARGATSSRASAPSCRTRSRLGQSPNRRGVA 444
CG+ + + TSS SAP+ T +R S + RGVA
Sbjct: 15 CGSYSPSADVSESETSSDCSAPTTTTTTRRFASSSSRGVA 54
>08_02_1322 +
26131395-26131599,26132382-26132468,26133119-26133372,
26133430-26133526,26133613-26133693,26133782-26133976,
26134093-26134182,26134296-26134471,26134565-26134687,
26134799-26134945,26135027-26135163,26135247-26135364,
26135462-26135518
Length = 588
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 82 DDMKEGTNFKRVIPEEGPASENPQNVRKLAFCSGRVYYD 198
D ++G FK+++ +EG ENP+++ +L C V Y+
Sbjct: 156 DICQDGGIFKKIL-KEGEKWENPKDLDELTLCIAVVKYE 193
>08_02_0702 -
20179838-20180040,20180397-20180464,20180642-20180970,
20181058-20181258,20181369-20181501,20181576-20181619,
20181694-20181753,20181872-20181931,20182840-20182921,
20183292-20183368,20183649-20183726,20183997-20184143,
20184189-20184254,20184376-20184417,20184513-20184992
Length = 689
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 10 PFRKPLILMTPKSLLRHPECKSSFDDMKEGTNFKRVIPEEGPASENP 150
PFR+P + T LL HP +D+ + + E PA + P
Sbjct: 329 PFREPELRSTASDLLLHPFVTGGLEDLHQVNHATHKETSELPAYDMP 375
>02_05_0197 -
26641356-26642188,26642312-26642398,26643373-26643452,
26643948-26644120,26644227-26644308,26644623-26644758,
26644777-26644833,26644905-26645120,26645939-26646335,
26646458-26646544,26647063-26647324,26648892-26648972,
26649176-26650350
Length = 1221
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 266 SVPVRPGEGRDREVPERSA 322
++P+R GEGRD EVP +A
Sbjct: 910 TIPMRSGEGRDCEVPGSTA 928
>07_03_1110 + 24047851-24047871,24047960-24048352,24048447-24048488
Length = 151
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 571 GLRAGRWRG-GCGATVIANGARTVSVS*ALLCGLSSRP 461
G R WR G GAT ++ A T+++ L C L +P
Sbjct: 32 GARLAAWRSDGLGATCMSFAALTLAMQAMLACVLEEKP 69
>01_06_1557 - 38231826-38233391
Length = 521
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 312 NAQLVWSQEEHKNMGSWSY 368
N Q++W Q E + M +WSY
Sbjct: 499 NEQMMWQQFETQQMAAWSY 517
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,196,596
Number of Sequences: 37544
Number of extensions: 274781
Number of successful extensions: 966
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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