Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10657X
         (572 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25552| Best HMM Match : Transket_pyr (HMM E-Value=1.6e-05)         102   2e-22
SB_48694| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   7e-14
SB_22527| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_14179| Best HMM Match : E-MAP-115 (HMM E-Value=2.8)                 29   3.6  
SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_26424| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_50108| Best HMM Match : Syntaxin (HMM E-Value=8.7)                  27   8.2  

>SB_25552| Best HMM Match : Transket_pyr (HMM E-Value=1.6e-05)
          Length = 405

 Score =  102 bits (244), Expect = 2e-22
 Identities = 44/80 (55%), Positives = 61/80 (76%)
 Frame = +1

Query: 7   LPFRKPLILMTPKSLLRHPECKSSFDDMKEGTNFKRVIPEEGPASENPQNVRKLAFCSGR 186
           L F   L++ TPKSLLR    +S  D+M +GT+F+R+IP+EGPASENP+ VRKL  C+G+
Sbjct: 173 LSFCVQLVIFTPKSLLRLEAARSHVDEMADGTSFRRIIPDEGPASENPEKVRKLLLCTGK 232

Query: 187 VYYDLLKQRRDKGLEKDIAI 246
           +YY+L K+R  +GL +DIAI
Sbjct: 233 IYYELFKERSKRGLTEDIAI 252



 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 29/45 (64%), Positives = 35/45 (77%)
 Frame = +3

Query: 255 EQISPFPYDQVKAEIAKYPNAQLVWSQEEHKNMGSWSYIEPRFRT 389
           EQISPFP+D +KAE  KY NA++VW+QEE KNMG W Y+ PR  T
Sbjct: 256 EQISPFPFDLLKAEAHKYRNAEIVWAQEEPKNMGYWGYVRPRLET 300



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +2

Query: 509 PRTISYNGRATAASPATGSK 568
           P + SY GRAT+AS ATG+K
Sbjct: 370 PLSYSYAGRATSASTATGNK 389


>SB_48694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 74.1 bits (174), Expect = 7e-14
 Identities = 41/78 (52%), Positives = 49/78 (62%)
 Frame = +1

Query: 13  FRKPLILMTPKSLLRHPECKSSFDDMKEGTNFKRVIPEEGPASENPQNVRKLAFCSGRVY 192
           FRKPLI++ PK LLR P   S+  DM  GT+F  VI   G  S NP  VR++ FCSG+ Y
Sbjct: 4   FRKPLIIVAPKLLLRLPAAMSTLHDMSPGTHFMPVI---GDTSMNPTEVRRVMFCSGKHY 60

Query: 193 YDLLKQRRDKGLEKDIAI 246
           Y LLK RR+K    D AI
Sbjct: 61  YSLLK-RREKTGNTDTAI 77



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 255 EQISPFPYDQVKAEIAKYPNAQ 320
           E ++PFP D ++ E+ +YP AQ
Sbjct: 81  EALTPFPMDAIRDEMRRYPGAQ 102


>SB_22527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
 Frame = +2

Query: 173 SVPDASTTIYSNRDA-TRDSKRTLLLLD*ADLSV--PVRPGEGRD 298
           +VPD S+T+Y NR A T   + ++++ D A+L++  P+ P    D
Sbjct: 571 TVPDKSSTVYENRTAVTPVFEASIIIGDRAELTISNPIVPSSKSD 615


>SB_14179| Best HMM Match : E-MAP-115 (HMM E-Value=2.8)
          Length = 313

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +3

Query: 378 RFRTLLQNQKQIRAKSQSKGGSWLS--QLFGRDESPQSNAQETETVR 512
           RF+   + + +IR  +  KGG W     LF +D S Q   Q     R
Sbjct: 96  RFQLSRKGKTEIRVHNYGKGGGWTKPYPLFNKDRSIQQRTQNESKSR 142


>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 324  VWSQEEHKNMGSWSYIEPRFRTLLQNQKQIRAKSQSKGGSWLS 452
            VWS     +  +WS  EP   TL  ++  +  ++ S+ G+W S
Sbjct: 989  VWSDRTKVDYTNWSPREPGSGTLADSKDCVVLEAGSQNGTWSS 1031


>SB_26424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = +1

Query: 55  RHPECKSSFDDMKEGTNFKRVIPEEGPASENPQNVRKLAFCSGRVYYDLLKQRRDKGLEK 234
           R P+C  +   +KE    KR+  + G   ++ +N  +         Y   K+ R+K  EK
Sbjct: 178 RKPKCLETMSHLKETYKPKRLYRKPGKEDDDEENRVRTTLLEYGWQYGFSKEEREKEKEK 237


>SB_50108| Best HMM Match : Syntaxin (HMM E-Value=8.7)
          Length = 285

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 143 RTLRMYANSHSVPDASTTIYSNRDATRDSKRT 238
           RT+R   + H + D   TIY NR  T D++ +
Sbjct: 9   RTIRKTYSQHLLDDTRYTIYENRYTTLDTQHS 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,425,266
Number of Sequences: 59808
Number of extensions: 284450
Number of successful extensions: 980
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)