Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10655
(333 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 28 0.43
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 26 1.3
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 25 3.0
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 3.0
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 25 3.0
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 25 4.0
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 24 5.3
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 24 5.3
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 24 5.3
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 24 7.0
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 23 9.2
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 23 9.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 23 9.2
SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces ... 23 9.2
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 23 9.2
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 27.9 bits (59), Expect = 0.43
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 18 VHAFVKRDAPKEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGT 164
V A +K+D +E S L TIE+L+ K E+ P K F +
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSS 176
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 1.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 48 KEDNSINTLAESAKKTIEELREKVESAL 131
KE NSI+ L+ S +KTIE R + S +
Sbjct: 371 KEKNSISELSPSLQKTIEWARVNLASTI 398
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 3.0
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Frame = +3
Query: 30 VKRDAPKEDNSINTLAESAKKTIEELREKVESALAPETVKK-------NFGTMVDSFNEF 188
+K+ P E ++ T E + E+ + ++ + + N+ + F+EF
Sbjct: 13 MKKKKPNESSNRITFTEDDSSSSEQEHAPIPNSFSSQITAASDASKDDNYDASIYGFDEF 72
Query: 189 YKNLKPAEAPKA*EVIF*YLSTNPKYIE 272
Y ++K AE + PKY+E
Sbjct: 73 YDSMKSAEREQMELKRLESKDRRPKYME 100
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.0 bits (52), Expect = 3.0
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +3
Query: 24 AFVKRDAPKEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEF 188
+ K + EDN AE ++T + ++++ +A ET K+F +D F +
Sbjct: 51 SLAKTEILHEDNPGLLEAEGLERTYKFRQDQLAPNVALETATKSFSLDLDKFGGY 105
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 3.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 246 LSTNPKYIECNNVLDV 293
L+ +P IECN VLDV
Sbjct: 546 LNVDPDTIECNRVLDV 561
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 24.6 bits (51), Expect = 4.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 45 PKEDNSINTLAESAKKTIEELREKVESA 128
PKED +T+ E +K I EKV+ A
Sbjct: 65 PKEDALYSTIREEYQKAINIQNEKVQLA 92
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.2 bits (50), Expect = 5.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 256 TPNISNVIMFSTLLNKS 306
TPN SNV + ++L+N+S
Sbjct: 515 TPNYSNVCLSTSLINRS 531
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 24.2 bits (50), Expect = 5.3
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 84 AKKTIEELREKVESALAPETVK-KNFGTMVDSFNEFYKNL 200
A+K IEE E E A A E ++ +NF T V+ E +K L
Sbjct: 418 AEKAIEEAAE-AERAEADERLRLENFSTWVNEKRETHKIL 456
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 24.2 bits (50), Expect = 5.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 3 ICLANVHAFVKRDAPKEDNSINTLAE 80
I +A+V +VK+D P +D + N ++E
Sbjct: 638 IHVADVAYYVKQDMPLDDEAANRVSE 663
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 23.8 bits (49), Expect = 7.0
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 46 LKKTIA*IRWLRVRRKQLRN*GKKLNPPWPRRLLRKTLARW 168
+ K++A + W R +++ PP+P + TLA+W
Sbjct: 28 VSKSMANVLWARYASTRIKT------PPFPESITEGTLAQW 62
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 23.4 bits (48), Expect = 9.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 299 FNNVENIITFDIFGVCT*ILKNYFSG 222
F N+EN+ TF V KNY G
Sbjct: 188 FGNIENLATFSTKFVALSSHKNYICG 213
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 23.4 bits (48), Expect = 9.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 304 FYSITSRTLLHSIYLGFVL 248
F SI SR LLH +LG V+
Sbjct: 678 FRSIFSRVLLHQSHLGNVI 696
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 23.4 bits (48), Expect = 9.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 125 GFNFFPQFLNCFLRTLSQRIYAIVFFRSISFDE 27
G N P L F+RT SQ + I+ +DE
Sbjct: 2390 GKNVLPYSL-IFVRTFSQETFLIIIMHHALYDE 2421
>SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 23.4 bits (48), Expect = 9.2
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = +3
Query: 15 NVHAFVKRDAPKEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSF 179
+V V R+ E+ T+ +AKK +E + +++ A + +D+F
Sbjct: 23 HVERTVDREFETEERRYRTMESAAKKLQKEAKGYLDALRAMTASQTRIANTIDAF 77
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 23.4 bits (48), Expect = 9.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 308 KLLFNNVENIITFDI 264
K +FNN++N ITF +
Sbjct: 676 KGIFNNIKNFITFQL 690
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,273,062
Number of Sequences: 5004
Number of extensions: 23312
Number of successful extensions: 87
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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