Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10655
(333 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0679 + 24230740-24230929,24231330-24231461,24231710-242319... 29 0.91
03_05_0825 - 27986393-27986767,27987541-27987625,27987936-279880... 28 1.6
05_03_0511 + 14907475-14907933,14907948-14908178,14908520-149088... 28 2.1
06_03_1085 + 27491735-27492754,27492854-27492978,27493088-274932... 27 3.7
05_07_0224 + 28500745-28500978,28501933-28502332,28502416-285024... 27 3.7
07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032... 26 6.4
11_06_0337 - 22454281-22456399,22458520-22459388 26 8.5
02_02_0724 + 13349419-13349641,13349880-13349974,13350366-133506... 26 8.5
>01_05_0679 +
24230740-24230929,24231330-24231461,24231710-24231977,
24232170-24232388,24233538-24233673,24233899-24234147,
24234783-24235100
Length = 503
Score = 29.1 bits (62), Expect = 0.91
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 63 INTLAESAKKTIEELR--EKVESALAPETVKKNFGTMVDSFNEFYKNLKPAE 212
++ E A+K E L+ +K +L PE +K+ F +++ +F +F L+P E
Sbjct: 254 VHATLEEARKFNEALQRWDKNAVSLVPEGLKRFFLSIMSNFRDFEDELEPHE 305
>03_05_0825 -
27986393-27986767,27987541-27987625,27987936-27988036,
27988144-27988227,27988868-27988939,27989203-27989319,
27989386-27989526,27989951-27990122,27990324-27990372,
27990773-27990821,27991240-27991270,27991301-27991371
Length = 448
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 45 PKEDNSINTLAESAKKTIEELREKVE 122
PKE ++ T+A + +KT EE+R +++
Sbjct: 91 PKESSTATTMAAATEKTAEEIRRELQ 116
>05_03_0511 +
14907475-14907933,14907948-14908178,14908520-14908855,
14909571-14910126,14910217-14910424,14910519-14910885,
14910988-14911110
Length = 759
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 99 EELREKVESALAPETVKKNFGTMVDSFNEFYKNLKP 206
EELR V T FGT++DS+N + LKP
Sbjct: 633 EELRVLVVKEAVRVTEAITFGTLIDSYNAAPEFLKP 668
>06_03_1085 +
27491735-27492754,27492854-27492978,27493088-27493232,
27493328-27493591
Length = 517
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 48 KEDNSINTLAESAKKTIEELREKVESAL 131
+E N ++ L + +K + ELR KVE A+
Sbjct: 49 EESNFLDDLKDGERKALAELRAKVEEAI 76
>05_07_0224 +
28500745-28500978,28501933-28502332,28502416-28502480,
28502633-28502692,28502865-28503014,28503386-28503541,
28503648-28503785,28503874-28503947,28504172-28504273,
28505415-28505604,28505756-28505830
Length = 547
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 39 DAPKEDNSINTLAESAKKTIEELREKV 119
+ PK+D ++L ES +T +E+ EKV
Sbjct: 516 EKPKQDRDEDSLTESMDETADEVSEKV 542
>07_03_1546 +
27602598-27602917,27602995-27603052,27603130-27603252,
27603896-27603992,27604095-27604131,27604244-27604349,
27604547-27604604,27604705-27604802,27604911-27605030,
27605622-27605667,27606336-27606522,27606747-27607263,
27607361-27607453,27608101-27608286,27608364-27608574,
27609263-27609387,27609518-27609664,27610114-27610236,
27610445-27610799,27611076-27611305,27611785-27611877
Length = 1109
Score = 26.2 bits (55), Expect = 6.4
Identities = 23/76 (30%), Positives = 38/76 (50%)
Frame = +3
Query: 45 PKEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAEAPKA 224
P+E S +T + +T+ + ++ +T F MVD+ +F+ N +P+EA A
Sbjct: 451 PQEQTSSST--DELNRTLADTLN-LDHGAPTDTSDSQF--MVDNGEDFFNNPQPSEASLA 505
Query: 225 *EVIF*YLSTNPKYIE 272
E I STN + IE
Sbjct: 506 EESI----STNGQQIE 517
>11_06_0337 - 22454281-22456399,22458520-22459388
Length = 995
Score = 25.8 bits (54), Expect = 8.5
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +3
Query: 90 KTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAEAPKA*EVIF*YLSTNPK 263
KT+++ +VE AL+ E +V N YKNL P + YLST PK
Sbjct: 403 KTLDQKLIEVEKALSAELGNNLTTEVVRIINHCYKNLPPDL-----KTCLLYLSTFPK 455
>02_02_0724 +
13349419-13349641,13349880-13349974,13350366-13350653,
13352838-13352963,13353045-13353204,13354142-13354190,
13354502-13354772,13356071-13356196,13357076-13357231,
13357815-13358058,13358181-13358627,13359348-13359478
Length = 771
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +3
Query: 30 VKRDAPKEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNE 185
+K P SI L+E +K+ S L+P FG +S +E
Sbjct: 452 LKEAIPAMQQSIADLSEEVNSVSSNPMDKIISRLSPSVQNSGFGRAEESSSE 503
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,682,979
Number of Sequences: 37544
Number of extensions: 133402
Number of successful extensions: 311
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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