Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10655
         (333 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)                     29   1.2  
SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)                     28   1.6  
SB_30369| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.2  
SB_11120| Best HMM Match : DUF1080 (HMM E-Value=0.082)                 28   2.2  
SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)                  27   5.0  
SB_15093| Best HMM Match : Rho_N (HMM E-Value=8.1e-05)                 27   5.0  
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)                     27   5.0  
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)                     26   6.6  
SB_40043| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_11397| Best HMM Match : ECSIT (HMM E-Value=1.7e-24)                 26   6.6  
SB_54300| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_32908| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_26222| Best HMM Match : Pneumo_NS1 (HMM E-Value=4.2)                26   8.8  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_46593| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_22650| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  

>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
          Length = 2440

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 33  KRDAPKEDNSINTLAESAKKTIEELREKVESALAPETVKK 152
           KRDAP  DN       S KK    L   +E+  +P +  K
Sbjct: 780 KRDAPLRDNDEQFRTYSRKKQHASLESSIEAPCSPRSASK 819


>SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)
          Length = 721

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 33  KRDAPKEDNSINTLAESAKKTIEELREKVE 122
           KR APK+ N+ + L    +K  EELR++ +
Sbjct: 62  KRQAPKDRNTASVLRAKIRKQEEELRKETQ 91


>SB_30369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 167 HRAKVFLNSLRGQGGFNFFPQFLNCFLRTLSQRIYAIVFFRSISFDECMHIG 12
           + A V L ++RG+GG NF    L      L    +  V+FR  S   C   G
Sbjct: 70  YEASVSLYNVRGRGGVNF--GHLGLAYNALDANNFDFVYFRPHSSGGCFQTG 119


>SB_11120| Best HMM Match : DUF1080 (HMM E-Value=0.082)
          Length = 748

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 167 HRAKVFLNSLRGQGGFNFFPQFLNCFLRTLSQRIYAIVFFRSISFDECMHIG 12
           + A V L ++RG+GG NF    L      L    +  V+FR  S   C   G
Sbjct: 70  YEASVSLYNVRGRGGVNF--GHLGLAYNALDANNFDFVYFRPHSSGGCFQTG 119


>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
          Length = 166

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/62 (24%), Positives = 23/62 (37%)
 Frame = +3

Query: 21  HAFVKRDAPKEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNL 200
           H     D  K +       E  KK + ++RE+  S L P    +       SF   +  +
Sbjct: 80  HGLASHDKKKRERPSLVARERMKKRLRKIREEFGSELLPIVYVREIVLAYISFCRLFMYV 139

Query: 201 KP 206
           KP
Sbjct: 140 KP 141


>SB_15093| Best HMM Match : Rho_N (HMM E-Value=8.1e-05)
          Length = 315

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 66  NTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNE 185
           N  A S KK + +  + + S   PE +KK     VDS  E
Sbjct: 81  NRAANSVKKELNKFADWILS-FVPEPIKKTVNKQVDSLKE 119


>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
          Length = 2478

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +3

Query: 48   KEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGTMVD----SFNEFYKNLK 203
            K    ++ L +S ++  EE+ EK+++    + + + + T  D     FNE  K L+
Sbjct: 1353 KNQAEVDALKKSLEEKTEEMNEKIKTLNQVKRIARRYKTQFDEQSKEFNEVKKKLE 1408


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 54  DNSINTLAESAKKTIEELREKVESALAPETVKK 152
           D  I  + E  K+T+E+ +EK E AL  E  +K
Sbjct: 861 DEKITKIKEQLKQTLEKFKEK-EKALKEEIAEK 892


>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
          Length = 2155

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 30  VKRDAPKEDNSINTLAESAKKTIEELREKVESAL 131
           ++R   ++DN + ++ E  K T EEL+  +E  +
Sbjct: 172 LQRQLSQKDNQLQSMKEDVKNTEEELKLDLEKVI 205


>SB_40043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
 Frame = +3

Query: 12  ANVHAFVKRDAPKED------NSINTLAESAKKTIEE--LREKVESALAP 137
           AN++   K D PKED      N    +A + +K + E   RE VE+ L+P
Sbjct: 428 ANINPLPKMDIPKEDKDYRGINITPVIARAFEKVVYENFAREPVEANLSP 477


>SB_11397| Best HMM Match : ECSIT (HMM E-Value=1.7e-24)
          Length = 316

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 15  NVHAFVKRDAPKE--DNSINTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEF 188
           ++H+ ++ D   E  + +I +   SAK    +   + E+AL+    + NF  +++SF+  
Sbjct: 82  DLHSDIRNDTVIELSEKAIESRITSAKPAPSKFALRFETALSQGKTRDNFIEILESFSRH 141

Query: 189 YKN 197
            +N
Sbjct: 142 DRN 144


>SB_54300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 33  KRDAPKED-NSINTLA--ESAKKTIEELREKVESALAPETVKKNF 158
           + D PKE    IN L    S ++T+ E+R    S  AP+ + +NF
Sbjct: 9   EHDNPKEAWKIINDLLGRSSDQRTVNEIRINGASVYAPDEIAENF 53


>SB_32908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 507

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 6   CLANVHAFVKRDAPKEDNSINTLAES 83
           C+AN + F K+    E  SI TLA++
Sbjct: 29  CIANYYCFEKKQGADEWTSIPTLADA 54


>SB_26222| Best HMM Match : Pneumo_NS1 (HMM E-Value=4.2)
          Length = 350

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 6   CLANVHAFVKRDAPKEDNSINTLAES 83
           C+AN + F K+    E  SI TLA++
Sbjct: 96  CIANYYCFKKKQGADEWTSIPTLADA 121


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 54   DNSINTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAEA 215
            D  +N + E     + E  E VES++  E  +   GT  +  ++  +++ PA+A
Sbjct: 2740 DEVVNEMEEENGNRVSE--ETVESSIRLENFENQLGTRDEGSSQDEESVSPAQA 2791


>SB_46593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 6   CLANVHAFVKRDAPKEDNSINTLAES 83
           C+AN + F K+    E  SI TLA++
Sbjct: 212 CIANYYCFKKKQGADEWTSIPTLADA 237


>SB_22650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
 Frame = +3

Query: 33  KRDAPKEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGTMVD-----SFNEFYKN 197
           K+   K+D S +  +     TI++     ESAL    VK  FG   D     SF   Y  
Sbjct: 192 KKSTNKQDRSSHVRSSKNPITIQQQSSAKESALVRNQVK--FGKTKDEQNPESFENDYVK 249

Query: 198 LKPAEAPKA*E 230
             P++ P+  E
Sbjct: 250 KAPSQVPQVLE 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,993,680
Number of Sequences: 59808
Number of extensions: 153235
Number of successful extensions: 508
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)