Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10655
         (333 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.2  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    20   6.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   6.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 82  LSASVFMLLSSLGASRLTNACTLA 11
           L     M   SLG S  T+ C+LA
Sbjct: 499 LCTKFLMHKDSLGLSTATSTCSLA 522


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +3

Query: 36  RDAPKEDNSINTLAESAKKTIEELREKVESALAPETVKKNF 158
           R+  K+D     L    KK +EE   +   + + E  +K++
Sbjct: 243 REYKKKDRRYEKLHNEKKKLLEERTSRKRYSRSREREQKSY 283


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 194 KSEARGSTESLRSNFLVSKYKPQIYRM 274
           +S+  G   SLR    V++ KP++ +M
Sbjct: 411 ESQMMGDEMSLRELTQVTEEKPRVMKM 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,592
Number of Sequences: 438
Number of extensions: 1638
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)