Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10655
(333 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g03160.1 68415.m00269 E3 ubiquitin ligase SCF complex subunit... 30 0.44
At3g28180.1 68416.m03521 glycosyl transferase family 2 protein s... 29 1.0
At1g73090.1 68414.m08451 expressed protein 28 1.4
At5g58720.1 68418.m07356 PRLI-interacting factor, putative simil... 27 2.4
At3g21510.1 68416.m02714 two-component phosphorelay mediator 3 (... 27 3.1
At1g21240.1 68414.m02654 wall-associated kinase, putative simila... 27 3.1
At5g42880.1 68418.m05226 hypothetical protein contains Pfam prof... 27 4.1
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 27 4.1
At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1... 27 4.1
At3g20460.1 68416.m02590 sugar transporter, putative similar to ... 27 4.1
At4g30010.1 68417.m04270 expressed protein 26 5.5
At3g62820.1 68416.m07058 invertase/pectin methylesterase inhibit... 26 5.5
At2g47040.1 68415.m05877 pectinesterase family protein contains ... 26 5.5
At5g03350.1 68418.m00288 legume lectin family protein contains P... 26 7.2
At2g45400.1 68415.m05646 dihydroflavonol 4-reductase family / di... 26 7.2
At4g29440.1 68417.m04203 expressed protein contains Pfam profil... 25 9.5
At3g22050.1 68416.m02781 receptor-like protein kinase-related co... 25 9.5
At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /... 25 9.5
>At2g03160.1 68415.m00269 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At19), putative E3 ubiquitin ligase; similar
to Skp1 GI:4959710 from [Medicago sativa]
Length = 200
Score = 29.9 bits (64), Expect = 0.44
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 9 LANVHAFVKRDAPKEDNSINTLAESAK--KTIEELREKVESALAPETVK 149
LA V + K+ +D+ + T S K KT+EE ++K + PE+ +
Sbjct: 52 LAKVIEYCKKHVEDDDDVVETHESSTKGDKTVEEAKKKPDDVAVPESTE 100
>At3g28180.1 68416.m03521 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 673
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 42 APKEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNL 200
A KE+ +ES + + +L+E+ + + ETVKK+ G ++ N+ N+
Sbjct: 570 AEKEEKLHRRNSESGLELLSKLKEQETNLVGQETVKKSLGGLMRPKNKKKTNM 622
>At1g73090.1 68414.m08451 expressed protein
Length = 306
Score = 28.3 bits (60), Expect = 1.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 128 LGPGDC*EKLWHDGRQLQRI 187
+GPG C + W +GR+LQ++
Sbjct: 272 IGPGVCVGQAWQEGRELQQV 291
>At5g58720.1 68418.m07356 PRLI-interacting factor, putative similar
to PRLI-interacting factor N [Arabidopsis thaliana]
GI:11139276; contains Pfam profile PF01713: Smr domain
Length = 519
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +3
Query: 33 KRDAPKEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAE 212
KR + + T ++ KK +EE R+ E E V KNF ++S E + ++ E
Sbjct: 12 KRSCAAKPSGDGTTSDGNKKDVEEERKDGEGKREIENVGKNF---IESLMEAFCSVSMEE 68
Query: 213 APKA 224
A A
Sbjct: 69 AMAA 72
>At3g21510.1 68416.m02714 two-component phosphorelay mediator 3
(HP3) identical to ATHP3 [Arabidopsis thaliana]
GI:4156245
Length = 154
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = -3
Query: 175 LSTIVPKFFLTVSGAKADSTFSLNSSIVFFA-LSASVFMLL---SSLGASRLTNACTLAR 8
+S +V FF D + SL+ +V F + V L SS+GA R+ NAC + R
Sbjct: 42 VSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFR 101
>At1g21240.1 68414.m02654 wall-associated kinase, putative similar
to wall-associated kinase 1 [Arabidopsis thaliana]
GI:3549626; expressed in leaves and stems & induced by
salicylic acid or INA (PMID:10380805)
Length = 741
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 145 TVSGAKADSTFSLNSSIVFFALSASVFMLLSSLGASRLTNAC 20
T G + S+FSL+S+ F + + LLS+ G + C
Sbjct: 105 TALGYQLGSSFSLSSNNKFTLVGCNALSLLSTFGKQNYSTGC 146
>At5g42880.1 68418.m05226 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 751
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 51 EDNSINTLAESAKKTIEELREKVESA 128
E N I+ ESA++ +EE++ +E A
Sbjct: 410 EKNDIHAAVESARRELEEVKANIEKA 435
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 18 VHAFVKRDAPKEDNSINTLAESAKKTIEELREKVESA 128
VH KRD+ + + ESA++ ++EL + + S+
Sbjct: 563 VHEAHKRDSSSQVKELEARVESAEEQVKELNQNLNSS 599
>At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1
family protein similar to 13S condensin XCAP-D2 subunit
[Xenopus laevis] GI:3764087; contains Pfam profile
PF04594: Non-SMC condensin subunit, XCAP-D2/Cnd1
Length = 1439
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 60 SINTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYK 194
S+ T E K + E + E ALA + V +NF ++++ +F K
Sbjct: 1171 SLLTFTEKGIKKLIESFKSYEHALAEDLVTENFRSIINKGKKFAK 1215
>At3g20460.1 68416.m02590 sugar transporter, putative similar to
ERD6 protein [Arabidopsis thaliana] GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 488
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -3
Query: 172 STIVPKFFLTVSGAKADSTFSLNSSIVFFALSASVFMLLSSLGASRLTNACTL 14
S +VP + + ++ K TFS +S+V A A ++L S + +L T+
Sbjct: 161 SYVVPVYIVEIAPKKVRGTFSAINSLVMCASVAVTYLLGSVISWQKLALISTV 213
>At4g30010.1 68417.m04270 expressed protein
Length = 90
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 75 AESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFY 191
+E K + EL ++S + ETVK + +D++NE Y
Sbjct: 8 SEIRGKKVTELPGYIKSTFSMETVKTSVKRGLDNYNEKY 46
>At3g62820.1 68416.m07058 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Arabidopsis thaliana SP|Q43867, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 194
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 130 KADSTFSLNSSIVFFALSASVFMLLSSLGASRLTNACTLAR 8
K + S+ ++VFF LS + L S S + NAC++ R
Sbjct: 2 KTPMSSSITFALVFFLLSLNPTSSLPSKRESYVQNACSVTR 42
>At2g47040.1 68415.m05877 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 595
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +3
Query: 6 CLANVHAFVKRDA---PKEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGTM 167
C+ ++ A + R+ PK+ N+I + A+KT+ V+ L+P T GT+
Sbjct: 312 CIIHIKAGIYREQVIIPKKKNNIFMFGDGARKTVISYNRSVK--LSPGTTTSLSGTV 366
>At5g03350.1 68418.m00288 legume lectin family protein contains Pfam
domain, PF00139: Legume lectins beta domain
Length = 274
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +3
Query: 78 ESAKKTIEELREKVESALAPETVKK 152
E K IE KV LAPETVKK
Sbjct: 201 ERYKAWIEYRNSKVTVTLAPETVKK 225
>At2g45400.1 68415.m05646 dihydroflavonol 4-reductase family /
dihydrokaempferol 4-reductase family similar to
dihydroflavonol 4-reductase (SP:P51102), vestitone
reductase (Medicago sativa, GI:973249)
Length = 364
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 45 PKEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGT 164
P + NS T K+T++ L ++S L +TVK+ F T
Sbjct: 121 PMDPNSNETEETVTKRTVQGLMGILKSCLDAKTVKRFFYT 160
>At4g29440.1 68417.m04203 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 1090
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 51 EDNSINTLAESAKKTIEELRE 113
+ ++ T AES+KKT++EL E
Sbjct: 379 DQSTTTTRAESSKKTVDELSE 399
>At3g22050.1 68416.m02781 receptor-like protein kinase-related
contains Pfam profile: PF01657 Domain of unknown
function; weak similarity to receptor-like protein
kinase homolog RK20-1 (GI:4530126) [Phaseolus vulgaris]
Length = 258
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = -3
Query: 121 STFSLNSSIVFFALSASVFMLLSSLGASRLTN 26
S++SL+ +++ + A F+L+ S+ + LTN
Sbjct: 3 SSYSLSKRLIYVPILAIQFLLVRSVSSLNLTN 34
>At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus; similar to cytosolic factor
(Phosphatidylinositol/phosphatidylcholine transfer
protein) (PI/PCTP) (SP:P24280) [Saccharomyces
cerevisiae]; ESTs gb|T76582, gb|N06574 and gb|Z25700
come from this gene
Length = 540
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +3
Query: 66 NTLAESAKKTIEELREKVESALAP--ETVKKNFGTMVDSFNEFYKN--LKPAEAPKA 224
NTL ++ KK ++EK E + P E KK + E K+ + EAPKA
Sbjct: 86 NTLLKTKKKESSPMKEKKEEVVKPEAEVEKKKEEAAEEKVEEEKKSEAVVTEEAPKA 142
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,393,156
Number of Sequences: 28952
Number of extensions: 114633
Number of successful extensions: 432
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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