Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10648X
(452 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 112 2e-26
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 111 5e-26
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 27 1.0
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 2.3
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 25 4.1
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 25 5.4
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 7.2
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 24 9.5
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 24 9.5
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 112 bits (270), Expect = 2e-26
Identities = 49/66 (74%), Positives = 56/66 (84%)
Frame = +3
Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPXXRWHRRVNLRQR 434
QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK +WH +VN ++
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEK 120
Query: 435 RAALAA 452
R A+A+
Sbjct: 121 RYAIAS 126
Score = 77.4 bits (182), Expect = 1e-15
Identities = 35/62 (56%), Positives = 46/62 (74%)
Frame = +1
Query: 73 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252
++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 253 HK 258
H+
Sbjct: 60 HQ 61
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 111 bits (267), Expect = 5e-26
Identities = 48/66 (72%), Positives = 56/66 (84%)
Frame = +3
Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPXXRWHRRVNLRQR 434
QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK +WH +VN ++
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEK 120
Query: 435 RAALAA 452
R A+++
Sbjct: 121 RYAISS 126
Score = 78.2 bits (184), Expect = 5e-16
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = +1
Query: 73 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252
++ ARP VS+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 253 HK 258
H+
Sbjct: 60 HQ 61
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 27.5 bits (58), Expect = 1.0
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 211 KNSRQPYCVSKEAGHKPVLNHGVLDVLSP 297
++ +PY ++ + + P+ N G LD++SP
Sbjct: 1054 EDGNEPYAITDDNDYLPMANTGSLDLVSP 1082
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 2.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 134 APCTVSLFSEYTDTKGRATDRLISLL 57
A C V ++SEYT G ++ L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.4 bits (53), Expect = 4.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 72 SIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGP 182
SI SP+ SVG + + D + S + P+ + G P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 5.4
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = -3
Query: 312 GHAEFGRQHV--QYPMIQHWFV 253
G++ F +HV +P ++HWFV
Sbjct: 320 GNSTFPTRHVLSYFPQVKHWFV 341
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 24.6 bits (51), Expect = 7.2
Identities = 11/45 (24%), Positives = 19/45 (42%)
Frame = +1
Query: 124 VQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHK 258
+QG+ P F + P+ + H ++ PY K+ HK
Sbjct: 709 LQGSDGPRKFTIEKAGEPNKLPKAHTCFNRLDLPPYTSKKDLDHK 753
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 24.2 bits (50), Expect = 9.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3
Query: 258 FVTSLLAHAVGLPRVL 211
F+ S+L H++ LPR+L
Sbjct: 482 FLASILTHSIALPRLL 497
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 24.2 bits (50), Expect = 9.5
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -3
Query: 333 TYEYHHHGHAEFGRQH 286
T++Y HH H G H
Sbjct: 19 THDYDHHNHDHHGHDH 34
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,965
Number of Sequences: 5004
Number of extensions: 31634
Number of successful extensions: 100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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