Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10645X
         (326 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   0.62 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   2.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    20   5.7  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    20   7.6  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.4 bits (48), Expect = 0.62
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -2

Query: 97  CKVSPCSE-GTFYSAYRSWDRVCRE 26
           CKV+PC   GT      ++  +C+E
Sbjct: 72  CKVNPCENGGTCVDKINAFQCICKE 96


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 215 LRWFVRNVDLHDDRALNQ 268
           + WF R + LHD+ +L +
Sbjct: 20  VHWFRRGLRLHDNPSLRE 37


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = -2

Query: 100 FCKVSPCSEG 71
           FC  SPC  G
Sbjct: 341 FCATSPCQNG 350


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 93  KCHLVPKGHFTPL 55
           + H+VP+G  TP+
Sbjct: 165 EAHIVPEGSRTPI 177


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,556
Number of Sequences: 336
Number of extensions: 1304
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6261139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)