Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10645X
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   2.2  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   2.9  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    25   3.8  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   3.8  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    24   6.7  

>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 43  PMICKRSKMSLRNKVTLYK 99
           P ICK ++++L+N +TL K
Sbjct: 63  PTICKGNEIALKNNITLEK 81


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 120 HDGPYASFVKCHLVPKGHFTPLTDHGIESAENECG 16
           +D P   +V  H    G F P T++G   AEN CG
Sbjct: 246 YDDPNVLYVSLHRYENGRFYPGTNYG--CAEN-CG 277


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 308 SKYRSDVDFMYFW--IDSRLGRRVGQRSSRTSGAPTANLQKRDCR 180
           SK+  D+DF Y W  I+ +  +  G+ S       + N QK+ CR
Sbjct: 252 SKHNYDIDFKYKWLCINEKCNKLYGRHSK------SINPQKQVCR 290


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = -3

Query: 147  VSEYHTRVSHDGPYASF----VKCHLVP-KGHFTPLTDHGIESAE 28
            + E    +  DG Y ++    + C ++  +GH   +T HGI  AE
Sbjct: 1355 LKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAE 1399


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 43  PMICKRSKMSLRNKVTLYKTCIRPVMTY 126
           P+I +RS  S       +K CIR   TY
Sbjct: 303 PLIQERSNSSKSGDFEHFKECIRSTKTY 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,266,279
Number of Sequences: 5004
Number of extensions: 21795
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)