Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10645X
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0255 - 3395548-3396129,3396203-3397834 29 1.1
09_06_0185 - 21422946-21423671,21423746-21423924,21424004-214242... 27 3.5
06_02_0109 - 11919279-11920109 27 3.5
02_02_0530 - 11222463-11222765,11223075-11223176,11223298-112236... 27 3.5
08_02_0866 + 22006822-22006899,22006997-22007080,22007621-220077... 27 4.6
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803... 26 6.1
06_03_0670 - 23336385-23336504,23336769-23337092,23338315-233383... 26 6.1
12_02_0979 - 25009721-25009975,25010058-25010127,25010216-250103... 26 8.0
11_01_0516 - 4025978-4026151,4026306-4026332 26 8.0
>04_01_0255 - 3395548-3396129,3396203-3397834
Length = 737
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 314 ALSKYRSDVDFMYFWIDSRLGRRV 243
A S + + V FM FW DS+ G+R+
Sbjct: 282 AASPFATSVAFMLFWFDSKQGQRM 305
>09_06_0185 -
21422946-21423671,21423746-21423924,21424004-21424241,
21424319-21424759
Length = 527
Score = 27.1 bits (57), Expect = 3.5
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 91 LYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPLVREER*PTRRPSLESI 270
LY+ C+ P + +V+ + T+I T + L RL GA + R S+
Sbjct: 410 LYRECVHPRVPQMAVIGYSESATNIQTCEMLTKWVARLLDGAFRLPPVR--RMEASVAEW 467
Query: 271 QKYM-KSTSERYFDKA 315
+YM +S E +F ++
Sbjct: 468 GRYMRRSAGEEHFRRS 483
>06_02_0109 - 11919279-11920109
Length = 276
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 167 TPSNPYNPAFAG*PSGLRWFVRNVDLHDDR 256
TPS P +PA AG SGLR + ++ D+
Sbjct: 50 TPSTPPDPAMAGVLSGLRGALDDISRSPDK 79
>02_02_0530 -
11222463-11222765,11223075-11223176,11223298-11223622,
11224072-11224106
Length = 254
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 120 HDGPYASFVKCHLVPKGHFTPLTDHGIESAENE 22
HD + VKC +GH L HG E E++
Sbjct: 154 HDQDIVNAVKCVRSTRGHLDDLRRHGWEKLESD 186
>08_02_0866 +
22006822-22006899,22006997-22007080,22007621-22007719,
22007864-22007908,22008170-22008265,22009150-22009227,
22009864-22009949,22010038-22010104,22010192-22010254,
22010332-22010433,22010559-22010663,22010748-22010840,
22011380-22011468,22012049-22012268,22012816-22012899,
22013221-22013337,22013399-22013473,22013589-22013675,
22013766-22013828,22014833-22014949,22015231-22015323,
22015794-22015919,22015992-22016092,22016917-22016996,
22017023-22017093,22017200-22017256,22017430-22017573
Length = 839
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 76 RNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAV 210
R+ VT+ K +RP + + V H A + Q R CRLA+
Sbjct: 754 RSFVTVIKMQMRPYVLFVETVSVHNAMLDVMFPLGQQWRACRLAL 798
>07_03_0685 -
20679883-20679927,20680034-20680087,20680179-20680390,
20680476-20680550,20683094-20683168,20686196-20686264,
20686349-20686502,20686577-20686654,20689102-20689194,
20689491-20689640,20690134-20690268,20691009-20691098,
20691412-20691453,20691796-20692053,20692131-20692207,
20693126-20693186,20693687-20693905,20694936-20695208,
20695314-20695505,20695841-20696011
Length = 840
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 151 ARTHIDTLQSLQSRFCRL 204
A+ HID + LQSRF RL
Sbjct: 15 AKAHIDLVVGLQSRFARL 32
>06_03_0670 -
23336385-23336504,23336769-23337092,23338315-23338387,
23338715-23338761,23338955-23339104,23339409-23339474,
23339940-23340013,23340740-23341520,23341730-23342146,
23344001-23344003
Length = 684
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 88 SPCSEGTFYSAYRSWDRVC 32
SPCS FYSAY++ D +C
Sbjct: 308 SPCSSRHFYSAYQTGD-IC 325
>12_02_0979 -
25009721-25009975,25010058-25010127,25010216-25010381,
25010501-25010651,25010843-25010890,25011172-25011225,
25011400-25011513,25012666-25012782,25012899-25012991,
25013085-25013123,25013990-25014055
Length = 390
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +1
Query: 37 LYPMICKRSKMSLRNKVTLYKTCIRPVMTYAS---VVFAHAARTHI 165
++P +C+ + + K T KTC+ + Y++ V+F A + H+
Sbjct: 202 VFPYLCRLFQCLRQYKDTKEKTCLLNALKYSTAVPVIFLSALKYHV 247
>11_01_0516 - 4025978-4026151,4026306-4026332
Length = 66
Score = 25.8 bits (54), Expect = 8.0
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -1
Query: 293 DVDFMYFWIDSRLGRRVGQRSSRTSGAPTANLQKRD--CRDWRVSM 162
DVD +Y W R GR +R + A + Q++ C + VSM
Sbjct: 15 DVDLVYSWGIPRKGREAKRRKGKRRDAAGSRQQQQQWWCNNKGVSM 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,296,454
Number of Sequences: 37544
Number of extensions: 149630
Number of successful extensions: 364
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -