Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10645X
         (326 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    36   0.007
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    32   0.11 
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    31   0.26 
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    31   0.26 
AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical...    28   1.8  
AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical ...    28   1.8  
AF045635-1|AAU87830.1|  480|Caenorhabditis elegans Nuclear hormo...    27   3.2  
AF039044-12|AAG24130.2|  405|Caenorhabditis elegans Hypothetical...    27   3.2  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    27   4.2  
U49829-5|AAK68351.1|  564|Caenorhabditis elegans Hypothetical pr...    26   7.4  
AF016419-3|AAG24048.1|  529|Caenorhabditis elegans Hypothetical ...    26   7.4  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    25   9.7  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = +1

Query: 34  RLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCR 201
           +L  M  K S  + +  + LYKT IRP + Y +VV +   ++   T++S+Q+ F R
Sbjct: 204 QLANMFNKYSTSNKKLMILLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +1

Query: 85  VTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCR 201
           + LYKT IRP + Y +VV +   ++    ++S+Q+ F R
Sbjct: 191 ILLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -1

Query: 296 SDVDFMYFWIDSRLGRRVGQRSSRTSGAPTANLQKRDCRDWRVSMCVRAA*ANTT 132
           SD   +Y+      G R  Q S RTSG+PT    KRD  D      + +   +TT
Sbjct: 225 SDSQGVYYDGQVLKGVRAKQFSMRTSGSPTLRRMKRDAGDNTCDYTIESTSTSTT 279


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -1

Query: 296 SDVDFMYFWIDSRLGRRVGQRSSRTSGAPTANLQKRDCRDWRVSMCVRAA*ANTT 132
           SD   +Y+      G R  Q S RTSG+PT    KRD  D      + +   +TT
Sbjct: 225 SDSQGVYYDGQVLKGVRAKQFSMRTSGSPTLRRMKRDAGDNTCDYTIESTSTSTT 279


>AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical
            protein Y6B3A.1a protein.
          Length = 1628

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = -3

Query: 312  LIEVPFRR*LHVFLD*FKARSSCRSTFLTNQRSPDG*PAKAGL*GLEGVYVCAGRVSEYH 133
            +IE  F+     FLD F+    C   F  NQ  PD       +  +  + +CA  VSE  
Sbjct: 1140 VIEKRFKEDFPAFLDSFQEALKCLQEFACNQNQPD-----MNMEAIRLIRLCADYVSENS 1194

Query: 132  TRV 124
             ++
Sbjct: 1195 DKI 1197


>AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical
            protein Y6B3A.1a protein.
          Length = 1628

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = -3

Query: 312  LIEVPFRR*LHVFLD*FKARSSCRSTFLTNQRSPDG*PAKAGL*GLEGVYVCAGRVSEYH 133
            +IE  F+     FLD F+    C   F  NQ  PD       +  +  + +CA  VSE  
Sbjct: 1140 VIEKRFKEDFPAFLDSFQEALKCLQEFACNQNQPD-----MNMEAIRLIRLCADYVSENS 1194

Query: 132  TRV 124
             ++
Sbjct: 1195 DKI 1197


>AF045635-1|AAU87830.1|  480|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 76 protein.
          Length = 480

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 177 LEGVYVCAGRVSEYHTRVSHDGPYASFVKCHLVPKGHFTPLTDHGIE 37
           ++G  V    + +Y+  V +DG     +   + P G +T L+DHG +
Sbjct: 295 VKGCAVSLAMLEKYYISVKYDGLRTQKL---IAPDGSYTDLSDHGAQ 338


>AF039044-12|AAG24130.2|  405|Caenorhabditis elegans Hypothetical
           protein F48G7.11 protein.
          Length = 405

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 46  MICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRL-AVGAP 219
           M+C+R   SL++++   K C R  M Y + +  +  +T  D + S  SR   L +VG+P
Sbjct: 48  MVCERESCSLKDRIQCCKIC-RLKMCYDAGMDPNKFQTGRDLISS-SSRSSNLSSVGSP 104


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 91   LYKTCIRPVMTYASVVFA 144
            LYKT + P+M Y S V+A
Sbjct: 1022 LYKTYVAPIMNYCSEVYA 1039


>U49829-5|AAK68351.1|  564|Caenorhabditis elegans Hypothetical
           protein F27D9.7 protein.
          Length = 564

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 102 SFVKCHLVPKGHFTPLTDHGIESAENEC 19
           SF K  +VPK    P+  +G++  E EC
Sbjct: 115 SFAKNTVVPKKGSLPVCGNGLQEDEEEC 142


>AF016419-3|AAG24048.1|  529|Caenorhabditis elegans Hypothetical
           protein F07G11.3 protein.
          Length = 529

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 307 RSTVPTLTSCISGLIQGSVVV*VNVPHEPAEPRRLTCKS 191
           R T+PTLT+C+  LI G +     +P +P  P  +  +S
Sbjct: 17  RRTLPTLTACL--LILGMIHF-TKLPRQPLPPPTINIES 52


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = -3

Query: 180  GLEGVYVCAGRVSEYHTRVSHDGPYASF----VKCHLVP-KGHFTPLTDHGIESAE 28
            G+E V     R  E    +S DG Y ++    + C ++  KGH   +T HGI   E
Sbjct: 1358 GIEAVRKAIER--EMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQE 1411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,074,998
Number of Sequences: 27780
Number of extensions: 127217
Number of successful extensions: 334
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)