Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10645X
         (326 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   2.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   5.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   6.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   6.6  

>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 136 VFAHAARTHIDTLQSLQSRFCRLAVGAPLVREER*PTRRPSLE 264
           V A A     DT+  + +RF R   G+ +++  +    RPSL+
Sbjct: 15  VSAQAELEPEDTMDYIPTRFRRQERGSIVIQGTKEGKSRPSLD 57


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 236 VDLHDDRAL 262
           VD+HDDR L
Sbjct: 383 VDIHDDRTL 391


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 215 LRWFVRNVDLHDDRALNQ 268
           + WF + + LHD+ +L +
Sbjct: 24  VHWFRKGLRLHDNPSLRE 41


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 76  RNKVTLYKTCIRPVMTYASVV 138
           RN+       +RP  TYAS++
Sbjct: 493 RNREFYKNADVRPPFTYASLI 513


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,834
Number of Sequences: 438
Number of extensions: 1669
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)