Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10645X
         (326 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32170.1 68415.m03932 expressed protein ;supported by cDNA GI...    33   0.060
At5g47350.1 68418.m05836 palmitoyl protein thioesterase family p...    27   3.0  
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro...    27   3.0  
At1g15770.1 68414.m01892 expressed protein                             27   3.9  
At3g18850.2 68416.m02394 phospholipid/glycerol acyltransferase f...    26   6.8  
At3g18850.1 68416.m02393 phospholipid/glycerol acyltransferase f...    26   6.8  
At2g32295.1 68415.m03948 EXS family protein / ERD1/XPR1/SYG1 fam...    26   6.8  
At2g33350.1 68415.m04088 hypothetical protein                          25   9.0  
At2g13640.1 68415.m01503 Golgi GDP mannose transporter (GONST1) ...    25   9.0  

>At2g32170.1 68415.m03932 expressed protein ;supported by cDNA
           GI:20259498
          Length = 504

 Score = 32.7 bits (71), Expect = 0.060
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -3

Query: 213 PDG*PAKAGL*GLEGVYVCAGRVSEYHTRVSHDGPYASFVKCHLVPKGH 67
           PD  PA AG+   EG  +C G   E +   SH G + + V C  +   H
Sbjct: 361 PDIHPASAGI--TEGFSMCGGDFVEVYNESSHAGMWDAVVTCFFIDTAH 407


>At5g47350.1 68418.m05836 palmitoyl protein thioesterase family
           protein
          Length = 316

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 156 AGRVSEYHTRVSHDGPYASFVKCHLVPKGHF 64
           +G + +    +  + PY+ FV+ +L P G+F
Sbjct: 145 SGLICDIANGIGKENPYSDFVQDNLAPSGYF 175


>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
           protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
           [Arabidopsis thaliana]
          Length = 430

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 251 RRVGQRSSRTSGAPTANLQKRDCRDWRVSMCVR 153
           +RV QR    S  PT +  ++ C  WR   C R
Sbjct: 10  KRVFQRLGGGSNRPTTDSNQKVCFHWRAGRCNR 42


>At1g15770.1 68414.m01892 expressed protein
          Length = 332

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 156 AGRVSEYHTRVSHDGPYASFVKCHLVPKGHFTPLTDHGIESAEN 25
           AG V    +R S      +  KCHL  +   T   DH  E+++N
Sbjct: 265 AGSVPGKGSRASFGVDLVAMTKCHLQERNFMTQDGDHEKEASDN 308


>At3g18850.2 68416.m02394 phospholipid/glycerol acyltransferase
           family protein contains Pfam profile: PF01553
           Acyltransferase
          Length = 375

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = -1

Query: 317 IALSKYRSDVDFMYFW 270
           + ++ +R++VD+MYFW
Sbjct: 95  LLIANHRTEVDWMYFW 110


>At3g18850.1 68416.m02393 phospholipid/glycerol acyltransferase
           family protein contains Pfam profile: PF01553
           Acyltransferase
          Length = 375

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = -1

Query: 317 IALSKYRSDVDFMYFW 270
           + ++ +R++VD+MYFW
Sbjct: 95  LLIANHRTEVDWMYFW 110


>At2g32295.1 68415.m03948 EXS family protein / ERD1/XPR1/SYG1 family
           protein low similarity to xenotropic and polytropic
           murine leukemia virus receptor [Mustela vison]
           GI:6093316; contains Pfam profile PF03124: EXS family
          Length = 424

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 122 LTRVWYSLTRPAHT*TPSNP 181
           +  VWY +  P HT   SNP
Sbjct: 382 IENVWYKINNPKHTAHQSNP 401


>At2g33350.1 68415.m04088 hypothetical protein
          Length = 440

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 262 ESIQKYMKSTSERYFDKAMRH 324
           E I++YMK  +ER F+K +++
Sbjct: 343 EKIRRYMKKRNERNFNKKIKY 363


>At2g13640.1 68415.m01503 Golgi GDP mannose transporter (GONST1)
           identical to cDNA GDP-Mannose transporter (GONST1)
           GI:15487236; PMID 11595802
          Length = 384

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 295 PTLTSCISGLIQGSVVV*VNVPHEPAEPRRLTCK 194
           P ++ CI  L   S+++ +N+  +P EPRR+  K
Sbjct: 288 PEVSRCIDAL---SLLMKINITPKPKEPRRMMDK 318


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,642,974
Number of Sequences: 28952
Number of extensions: 117332
Number of successful extensions: 275
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 370553816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)