Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10642X
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...    90   1e-19
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...    85   2e-18
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   1.9  
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    25   2.5  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    25   3.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   4.4  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   4.4  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   4.4  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    25   4.4  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    24   5.8  
SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||...    24   5.8  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    24   7.6  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 89.8 bits (213), Expect = 1e-19
 Identities = 44/65 (67%), Positives = 50/65 (76%)
 Frame = +3

Query: 45  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 224
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK EIREKLA+MYK   + V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59

Query: 225 FKTNF 239
            +T+F
Sbjct: 60  LRTHF 64



 Score = 39.5 bits (88), Expect = 1e-04
 Identities = 18/29 (62%), Positives = 21/29 (72%)
 Frame = +2

Query: 254 TGFALIYDTLDLAKKFEPKHRLARHGLYE 340
           TGFALIYD+ +  KKFEP +RL R G  E
Sbjct: 70  TGFALIYDSTESMKKFEPHYRLVRVGQAE 98


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 85.4 bits (202), Expect = 2e-18
 Identities = 40/65 (61%), Positives = 48/65 (73%)
 Frame = +3

Query: 45  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 224
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK ++REKL +MYK     V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59

Query: 225 FKTNF 239
            +T++
Sbjct: 60  LRTHY 64



 Score = 39.5 bits (88), Expect = 1e-04
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = +2

Query: 254 TGFALIYDTLDLAKKFEPKHRLARHG 331
           TGFALIYD ++  KKFEP +RL R G
Sbjct: 70  TGFALIYDDVEAMKKFEPHYRLVRVG 95


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 77  ASANSRCSFTHFELFSII 24
           +S  SRCSFT FE+ SI+
Sbjct: 777 SSVISRCSFTDFEINSIL 794


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
 Frame = -3

Query: 316 PVLGLELLGQIECVVDQSESSXLPPPKFVLKPNTNTTSGVTLYILASFSRISVLLTVGFP 137
           P    ELL  I  +VDQ+ ++      FV  PNT  +S +      +  +    +   +P
Sbjct: 123 PYFAKELLRLIRTLVDQASANGRVYVYFVGMPNTGKSSILNSLRNVALRKSKSAIVGNYP 182

Query: 136 G-CKTSQTICLRANNLLVMNLRVRIVAVPSL 47
           G  K    I    N++ V  L    +  PS+
Sbjct: 183 GVTKRISEIVRLFNDMDVYMLDTPGIMTPSI 213


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 162 EIREKLAKMYKVTPDVVFVFGFKTN 236
           +++E LAK YK+ P  +F   F T+
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTS 310


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 244 PPKFVLKPNTNTTSGVTLYILASFS 170
           PPK  LKP+ +T+  ++ Y LA  S
Sbjct: 818 PPKEPLKPSLDTSPELSKYSLAKLS 842


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 172 SRISVLLTVGFPGCKTSQTICLRANNL 92
           SRI  + ++G    K  Q++CLR N +
Sbjct: 48  SRIQSMASLGLERFKNLQSLCLRQNQI 74


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 53  RNSDYSHSQVHDQQIVGAQADGLRCFTSRKTNRQQDRDP 169
           +NS++S +   +Q    + ADG R +   +   Q+ R+P
Sbjct: 449 KNSEFSETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNP 487


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 275 DTLDLAKKFEPKHRLARHGLYEE 343
           D + L     PKHRL  HG  EE
Sbjct: 498 DLIKLLLNRNPKHRLGAHGDVEE 520


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = -3

Query: 301 ELLGQIECVVDQSESSXLPPPK------FVLKPNTNTTSGVTLYI 185
           ELL Q+E +  Q ++S L  PK       V+KP++ TT     Y+
Sbjct: 92  ELLEQLEMLQAQLKNSTLDSPKEVEVNSEVVKPDSATTENENRYV 136


>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 186

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +1

Query: 229 RQTSE-VAXHWIRFDLRHTRSGQEVRAQAQVSP 324
           R T E +  HW+R D        E  AQ +VSP
Sbjct: 99  RLTKEKLRLHWLRTDFDRWVDEDEQEAQPEVSP 131


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 221  EYEHYIGSNLVHFGELLTDLGLAD 150
            +YE + G   VHF   LT+ G+ +
Sbjct: 985  DYESHHGEGNVHFNVTLTEAGMKE 1008


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,409,921
Number of Sequences: 5004
Number of extensions: 25003
Number of successful extensions: 68
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)