Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10642X
(345 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 85 1e-17
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 82 1e-16
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 82 1e-16
01_06_0355 + 28657833-28660665,28660762-28661126 29 1.3
07_01_1045 + 9131301-9131483,9131652-9131717,9132433-9132513,913... 28 2.3
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 28 2.3
12_02_0342 - 17742326-17742356,17742503-17742621,17743148-177431... 27 3.9
01_01_0801 - 6241710-6241869,6242522-6242689,6243202-6243269,624... 27 5.2
04_04_1214 - 31798271-31799134,31799218-31799301,31799469-317996... 26 9.1
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 26 9.1
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 85.4 bits (202), Expect = 1e-17
Identities = 38/60 (63%), Positives = 51/60 (85%), Gaps = 1/60 (1%)
Frame = +3
Query: 63 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 239
T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70
Score = 49.2 bits (112), Expect = 9e-07
Identities = 22/45 (48%), Positives = 29/45 (64%)
Frame = +2
Query: 200 SRCSVRIRFQDKLRRWQXTGFALIYDTLDLAKKFEPKHRLARHGL 334
+ C +F+ + TGF LIYD LD AKK+EPK+RL R+GL
Sbjct: 58 ANCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGL 102
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 81.8 bits (193), Expect = 1e-16
Identities = 37/60 (61%), Positives = 50/60 (83%), Gaps = 1/60 (1%)
Frame = +3
Query: 63 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 239
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Score = 46.0 bits (104), Expect = 8e-06
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +2
Query: 200 SRCSVRIRFQDKLRRWQXTGFALIYDTLDLAKKFEPKHRLAR 325
S C +F+ + TGF LIYD LD AKK+EPK+RL R
Sbjct: 58 SNCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 81.8 bits (193), Expect = 1e-16
Identities = 37/60 (61%), Positives = 50/60 (83%), Gaps = 1/60 (1%)
Frame = +3
Query: 63 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 239
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Score = 50.4 bits (115), Expect = 4e-07
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = +2
Query: 200 SRCSVRIRFQDKLRRWQXTGFALIYDTLDLAKKFEPKHRLARHGL 334
S C +F+ + TGF LIYD LD AKK+EPK+RL R+GL
Sbjct: 58 SNCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGL 102
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -3
Query: 223 PNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 44
PN S +TL L + + L +GFP CK + + + LL ++V +PS++
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLL------KVVLIPSIL 723
>07_01_1045 +
9131301-9131483,9131652-9131717,9132433-9132513,
9133414-9133482,9133581-9133643,9133933-9133941,
9134259-9134341,9134415-9134517
Length = 218
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 316 PVLGLELLGQIECVVDQSESSXLPPPKFVLKP 221
PV G +L I+C + E +P P+F L P
Sbjct: 181 PVTGRDLSRAIDCALSGQELPFVPKPRFPLVP 212
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -3
Query: 172 SRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 44
+R+ V + +GF C+ QT C R+ +++ N+ A+P+ +
Sbjct: 364 TRMLVTVGLGFSSCQPEQTQCNRSAPVVLANMNNVSFALPNTV 406
>12_02_0342 -
17742326-17742356,17742503-17742621,17743148-17743175,
17743971-17744063,17744517-17744628,17745593-17745729,
17745924-17745958,17746938-17747000
Length = 205
Score = 27.1 bits (57), Expect = 3.9
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -3
Query: 274 VDQSESSXLPPPKFVLKPNTNTTSGVT-LYILASFSRISVLLTVGFPGCK-TSQTICLRA 101
++Q+ S LPP L+P T+T S T YI S SV T+ K T T CL
Sbjct: 50 MEQASESCLPPLPISLEPKTSTASKATEPYIQNSIP--SVGCTICKSNLKITKATACLSI 107
Query: 100 NNL 92
L
Sbjct: 108 QEL 110
>01_01_0801 -
6241710-6241869,6242522-6242689,6243202-6243269,
6243372-6243593,6243676-6243774
Length = 238
Score = 26.6 bits (56), Expect = 5.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 194 LVHFGELLTDLGLADGWFSWM*NIANHLLARQQSVGHELASANSR 60
LV FG+ +T+L ADG W +A+H + V + N+R
Sbjct: 5 LVLFGDSITELSFADG--GWGAALADHFARKADVVLRGFSGYNTR 47
>04_04_1214 -
31798271-31799134,31799218-31799301,31799469-31799614,
31799658-31799739
Length = 391
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 257 GFALIYDTLDLAKKFEPKHRL 319
GF L D L+ AK F+ KH+L
Sbjct: 129 GFVLGKDALERAKSFDEKHQL 149
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 123 DVLHPGKPTVSKTEIREKLAKMYKVTPDVVFV 218
D+L + KT +R L Y + PD +FV
Sbjct: 724 DILSIARSVCCKTSLRAALKAKYGILPDNIFV 755
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,477,425
Number of Sequences: 37544
Number of extensions: 170535
Number of successful extensions: 447
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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