Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10642X
         (345 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0)                       30   0.58 
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.77 
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)                   28   2.3  
SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)               28   2.3  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            27   3.1  
SB_5462| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.1  
SB_43942| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)                      27   5.4  
SB_33931| Best HMM Match : NADH5_C (HMM E-Value=0.67)                  26   7.1  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       26   7.1  
SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  
SB_9883| Best HMM Match : BNR (HMM E-Value=1.4e-10)                    26   9.4  
SB_57498| Best HMM Match : Gene66 (HMM E-Value=7.7)                    26   9.4  
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  26   9.4  

>SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 795

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -3

Query: 280 CVVDQSESSXLPPPKF-VLKPNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLR 104
           C  D + S   PPPKF +     ++T  V L +L  F  + V++           T C  
Sbjct: 6   CCNDSNSSINSPPPKFSITTIAVSSTFVVILLLLTVFGNVLVIMAFKVFHRMRQVTNCFV 65

Query: 103 ANNLLVMNLRVRIVAVP 53
           A +L V ++ V + A+P
Sbjct: 66  A-SLAVTDILVAVFAMP 81


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 209 YIGSNLVHFGELLTDLGLADGWFSWM*NIANHLLARQQSVGHELASANS 63
           +I  N  +F   + DLG+A  +   +  + +H L R Q+VGH  A   S
Sbjct: 289 FIDFNDFYFSNRVVDLGIALAYIMMLPQVNSH-LTRPQAVGHMFAGYQS 336


>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
          Length = 1468

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -3

Query: 235  FVLKPNTNTTSGVTL---YILASFSRISVLLTVGFPGCKTSQT 116
            F+  PN   ++  TL    ++ S  R+ V+ +VG PGC  S T
Sbjct: 904  FISIPNITISNTFTLSWWMLVQSVQRVYVMTSVGNPGCGASPT 946


>SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 1074

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 185 FGELLTDLGLADGWFSWM*NIANHLLA 105
           FGEL+ D G +   F+W+ N++N +LA
Sbjct: 76  FGELMLDAGWSRNAFNWL-NMSNSMLA 101


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -3

Query: 232 VLKPNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVM 83
           V+  NT  ++ +T     +F  I +++T     C++S TI +  NN + +
Sbjct: 137 VIINNTIISTKITTSTTTTFIIIIIIITTSSHHCRSSTTIVVTTNNTITI 186


>SB_5462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 268 QSESSXLPPPKFVLKPNTNTTSGVTLY 188
           QSESS LP   ++  P    TSG+ +Y
Sbjct: 147 QSESSKLPIHMYINSPGGTVTSGLGIY 173


>SB_43942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 973

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 130 KTSQTICLRANNLLVMN-LRVRIVAVPSLILNYFQ*FGVYTH 8
           K S  + LR +NL   + +  RIV  P   ++Y + FG+Y H
Sbjct: 245 KRSPKMILRLHNLCWRHAMSCRIVPTPPKAISYRKLFGIYFH 286


>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2671

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 323  GLTCAWARTSWPDRVCRRSKRIQ*XATSEVCLETEYEHY 207
            GL C W R S   +  R+SKRIQ      VC  + +E++
Sbjct: 1768 GLHC-WVRKSRLPKGRRKSKRIQCGRLRSVCTPSVWENH 1805


>SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)
          Length = 1705

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 323 GLTCAWARTSWPDRVCRRSKRIQ*XATSEVCLETEYEHY 207
           GL C W R S   +  R+SKRIQ      VC  + +E++
Sbjct: 80  GLHC-WVRKSRLPKGRRKSKRIQCGRLRSVCTPSVWENH 117


>SB_33931| Best HMM Match : NADH5_C (HMM E-Value=0.67)
          Length = 407

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 295 LGQIECVVDQSESSXLPPPKFVL 227
           +G +  V+ +S +S +PPP FVL
Sbjct: 169 IGFLTAVITRSTASLIPPPGFVL 191


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = -3

Query: 295  LGQIECVVDQSESSXLPPPKFVLKPNT 215
            +G++ C  +      + PP+F++KP++
Sbjct: 3042 VGEVSCTAELLVEEGMRPPQFIVKPSS 3068


>SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -3

Query: 193 LYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLILNYFQ*FGVY 14
           LYI+ S   + VL  +G P C      CL    ++   + V IV V  ++++ +  F +Y
Sbjct: 102 LYIVMSVYIVLVLYVIGVPMCHVMTNDCLPCRYIV---MSVYIVFVLYIVMSVYIVFVLY 158


>SB_9883| Best HMM Match : BNR (HMM E-Value=1.4e-10)
          Length = 205

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 304 LELLGQIECVVDQSESSXLPPPKFVL--KPNTNTTSGV 197
           L     I CVV +++S+ L  P+F++  K N NT S V
Sbjct: 134 LSYKNDIVCVVGKNKSNNLSNPEFLMLSKDNGNTWSRV 171


>SB_57498| Best HMM Match : Gene66 (HMM E-Value=7.7)
          Length = 335

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 89  GHELASANSRCSFTHFELFSIIRRLHA 9
           GH L +   R S TH+EL   + R HA
Sbjct: 181 GHTLRTVYGRYSDTHYELSMDVIRTHA 207


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 100  NNLLVMNLRVRIVAVPSLILNYFQ*F 23
            +N+LV  +  R   VPSLI N+F  F
Sbjct: 2931 DNVLVPRVTYRFPVVPSLIRNFFNRF 2956


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,043,390
Number of Sequences: 59808
Number of extensions: 202551
Number of successful extensions: 491
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)