Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10642X
         (345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal pro...    88   1e-18
Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical pr...    42   9e-05
AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical ...    33   0.042
Z50027-6|CAO82026.1|  564|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine rece...    28   2.1  
Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical pr...    27   3.6  
U55366-8|AAZ91347.1|  287|Caenorhabditis elegans Serpentine rece...    27   3.6  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z81513-3|CAB04185.3|  476|Caenorhabditis elegans Hypothetical pr...    26   6.3  
Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical pr...    26   6.3  
AF016686-13|AAB66233.1|  470|Caenorhabditis elegans Hypothetical...    26   6.3  
Z81036-2|CAD30433.1|  431|Caenorhabditis elegans Hypothetical pr...    26   8.3  
Z81036-1|CAB02742.1|  473|Caenorhabditis elegans Hypothetical pr...    26   8.3  
U97549-9|AAB52849.2|  472|Caenorhabditis elegans Hypothetical pr...    26   8.3  
AF291851-1|AAK55968.1|  103|Caenorhabditis elegans G protein sig...    26   8.3  

>AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 24 protein.
          Length = 131

 Score = 88.2 bits (209), Expect = 1e-18
 Identities = 38/57 (66%), Positives = 48/57 (84%)
 Frame = +3

Query: 63  TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKT 233
           TIRTRK +TN+LL RKQMV +V+HPG+PTV K +IREK+AK+YK TPD V  FGF++
Sbjct: 6   TIRTRKVLTNKLLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFES 62



 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +2

Query: 224 FQDKLRRWQXTGFALIYDTLDLAKKFEPKHRLARHGL 334
           F+ K+   +  GFAL+YDT+D AKKFEPK+RL R GL
Sbjct: 60  FESKIGGGKSKGFALVYDTIDFAKKFEPKYRLVRMGL 96


>Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical
           protein T26G10.3 protein.
          Length = 91

 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +3

Query: 114 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 212
           MV +V+ PG+PT  K +IREK+A  Y + PD +
Sbjct: 1   MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33


>AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical
           protein T07A9.14 protein.
          Length = 204

 Score = 33.5 bits (73), Expect = 0.042
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 257 GFALIYDTLDLAKKFEPKH 313
           GF L+YDT D A K++P+H
Sbjct: 54  GFTLVYDTFDFANKYQPEH 72


>Z50027-6|CAO82026.1|  564|Caenorhabditis elegans Hypothetical
           protein C39B10.2b protein.
          Length = 564

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 310 LGLELLGQIECVVDQSESSXLPPPKFVLKPNTNTTSGVTLYILASFSR 167
           + + +   + C  D+++SS     KF  KP  N T+G   YI  S ++
Sbjct: 459 MAMSIYDNVSCRKDEADSSS-EETKFSTKPKRNGTNGTRKYIDKSLNQ 505


>U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine
           receptor, class x protein74 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -3

Query: 175 FSRISVLLTV-GFPGCKTSQTICL-RA-NNLLVMNLRVRIVAVPSLILNY 35
           FS + V L V GF    +   ICL RA NN++V+ +   I   P+L+L+Y
Sbjct: 22  FSSLIVYLYVSGFAEKTSFNVICLVRAVNNIIVLVVNFLIFLFPTLLLSY 71


>Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical
           protein F25D7.3 protein.
          Length = 817

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = -2

Query: 239 EVCLE--TEYEHYIGSNLVHFGELLTDLGLADGWFSWM*NIANHLLARQQSVGHELASAN 66
           E+C +  T+  H    +LVH GE      + D  FS   N+  HL        +     +
Sbjct: 539 EICTKEFTQLAHLQKHHLVHTGERPHRCDICDKRFSSTSNLKTHLRLHNGQKPYTCDVCD 598

Query: 65  SRCSFTHFELFSIIRRLHA 9
           ++  FT +    + +RLHA
Sbjct: 599 AK--FTQYVHLRLHKRLHA 615


>U55366-8|AAZ91347.1|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein73 protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = -3

Query: 130 KTS-QTICL-RA-NNLLVMNLRVRIVAVPSLILNY 35
           KTS   ICL RA NN++V+     ++  PSL+L+Y
Sbjct: 4   KTSFNVICLTRAVNNIIVLVFNFLVITFPSLLLSY 38


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 128 NIANHLLARQQSVGHELASANSRCSFTHFELFSI 27
           N  NH+L++ + V H ++ ANSR +    E+ +I
Sbjct: 784 NEENHILSQTRPVSHPVSRANSRPTTPGLEIKTI 817


>Z81513-3|CAB04185.3|  476|Caenorhabditis elegans Hypothetical
           protein F26D2.3a protein.
          Length = 476

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 2   RHVRVDAELLKIIQNE*RNSDY 67
           +H + D + L++ +NE RNSDY
Sbjct: 266 KHSKWDLKSLRLFRNESRNSDY 287


>Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical
           protein T10G3.2 protein.
          Length = 346

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 221 RFQDKLRRWQXTGFALIYDTLDLAKKFEPKH 313
           RF +K R W   G+AL++  + +  +F  +H
Sbjct: 130 RFYEKSRYWMTLGYALVFACILVYIEFANRH 160


>AF016686-13|AAB66233.1|  470|Caenorhabditis elegans Hypothetical
           protein R07C3.3 protein.
          Length = 470

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +2

Query: 2   RHVRVDAELLKIIQNE*RNSDY 67
           +H++ D + LK+ +N+ +NSDY
Sbjct: 261 KHLKWDLKSLKLFRNDSKNSDY 282


>Z81036-2|CAD30433.1|  431|Caenorhabditis elegans Hypothetical
           protein C16C2.2b protein.
          Length = 431

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 179 RQNVQGYSRCSVRIRFQDKLRRW 247
           RQN QGY     R+RF  K + W
Sbjct: 201 RQNAQGYRCLMDRLRFAIKTKPW 223


>Z81036-1|CAB02742.1|  473|Caenorhabditis elegans Hypothetical
           protein C16C2.2a protein.
          Length = 473

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 179 RQNVQGYSRCSVRIRFQDKLRRW 247
           RQN QGY     R+RF  K + W
Sbjct: 201 RQNAQGYRCLMDRLRFAIKTKPW 223


>U97549-9|AAB52849.2|  472|Caenorhabditis elegans Hypothetical
           protein F15A8.7 protein.
          Length = 472

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 60  ATIRTRKFMTNRLLARKQMVCDVLHPG 140
           A + T +F+  R+L+ + +V DVL PG
Sbjct: 336 AEVLTPRFLEPRVLSPEALVIDVLSPG 362


>AF291851-1|AAK55968.1|  103|Caenorhabditis elegans G protein
           signaling regulator EAT-16 protein.
          Length = 103

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 179 RQNVQGYSRCSVRIRFQDKLRRW 247
           RQN QGY     R+RF  K + W
Sbjct: 1   RQNAQGYRCLMDRLRFAIKTKPW 23


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,958,495
Number of Sequences: 27780
Number of extensions: 145249
Number of successful extensions: 439
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)