Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10642X
         (345 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) simi...    93   6e-20
At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S ...    90   4e-19
At5g26850.1 68418.m03203 expressed protein                             28   1.9  
At1g49230.1 68414.m05519 zinc finger (C3HC4-type RING finger) fa...    26   5.9  
At1g12240.1 68414.m01416 beta-fructosidase (BFRUCT4) / beta-fruc...    26   5.9  
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains...    26   7.7  
At2g07715.1 68415.m00965 ribosomal protein L2, putative similar ...    26   7.7  

>At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) similar
           to ribosomal protein S19 GB:445612 [Solanum tuberosum]
           and similar to ribosomal protein S24 GB:4506703 [Homo
           sapiens]
          Length = 133

 Score = 92.7 bits (220), Expect = 6e-20
 Identities = 43/66 (65%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
 Frame = +3

Query: 45  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 221
           M+E   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY+V  P+ +FVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 222 GFKTNF 239
            F+T+F
Sbjct: 61  KFRTHF 66



 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 20/38 (52%), Positives = 28/38 (73%)
 Frame = +2

Query: 221 RFQDKLRRWQXTGFALIYDTLDLAKKFEPKHRLARHGL 334
           +F+      + +GF LIYDT++ AKKFEPK+RL R+GL
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGL 98


>At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S
           ribosomal protein S19, Cyanophora paradoxa,
           EMBL:CPA245654
          Length = 133

 Score = 89.8 bits (213), Expect = 4e-19
 Identities = 42/66 (63%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
 Frame = +3

Query: 45  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 221
           M+E   TIRTR FMTNRLLARKQ V DVLHPG+  VSK E++EKLA+MY+V  P+ +F F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 222 GFKTNF 239
            F+T+F
Sbjct: 61  KFRTHF 66



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 19/38 (50%), Positives = 28/38 (73%)
 Frame = +2

Query: 221 RFQDKLRRWQXTGFALIYDTLDLAKKFEPKHRLARHGL 334
           +F+      + +G+ LIYDT++ AKKFEPK+RL R+GL
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGL 98


>At5g26850.1 68418.m03203 expressed protein
          Length = 919

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 84  MTNRLLARKQMVCDVLHPGKPTVSKTEIRE-KLAKMYKVTPDVVFVFGFKTN 236
           M +++     ++ D++    P +SK E  + K+  + + TPD  F+FG + N
Sbjct: 702 MRSKVELSNTIITDIVAKNLPKLSKLEEADVKMQILEQFTPDDAFMFGSRPN 753


>At1g49230.1 68414.m05519 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 219

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 211 TTSGVTLYILASFSRISVLLTVGFPGCKTSQTICL 107
           T +GV    L SF  +S    +  PG  T   ICL
Sbjct: 101 TNTGVKRKALKSFQTVSYSTELNLPGLDTECAICL 135


>At1g12240.1 68414.m01416 beta-fructosidase (BFRUCT4) /
           beta-fructofuranosidase / invertase, vacuolar identical
           to beta-fructosidase GI:1871503 from [Arabidopsis
           thaliana]; contains Pfam profile PF00251:Glycosyl
           hydrolases family 32; identical to cDNA
           beta-fructosidase (vacuolar form) GI:1321683; similar to
           SP:Q43857
          Length = 664

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +2

Query: 161 RDP*EARQNVQGYSRCSVRIRFQDKLRRWQXTGFALIYDTLDLAKKFEP----KHRLARH 328
           RDP  A +  +G      RI    KL +   TG +L+YDT+D  K +E      HR+   
Sbjct: 258 RDPTTAWKTSEG----KWRITIGSKLNK---TGISLVYDTIDF-KTYEKLDTLLHRVPNT 309

Query: 329 GLYE 340
           G++E
Sbjct: 310 GMWE 313


>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family ('A'TPases
           'A'ssociated with diverse cellular 'A'ctivities)
          Length = 820

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 138 GKPTVSKTEIREKLAKMYKVTPDVVFV 218
           G    S+  IRE  +K Y+  P +VF+
Sbjct: 306 GVSGASEENIRELFSKAYRTAPSIVFI 332


>At2g07715.1 68415.m00965 ribosomal protein L2, putative similar to
           ribosomal protein L2 [Gossypium arboreum] GI:17933133;
           contains Pfam profile PF00181: Ribosomal Proteins L2,
           RNA binding domain
          Length = 307

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 244 PPKFVLKPNTNTTSGV 197
           PP+ +L+P TNT SG+
Sbjct: 91  PPRKILEPTTNTISGL 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,471,722
Number of Sequences: 28952
Number of extensions: 134053
Number of successful extensions: 365
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)