Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10636X
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   2.2  
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra...    25   5.1  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    24   9.0  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 280 DHTLSPRQQHYASSRYNINYIHLYN 206
           +HT    Q+H+    +N ++IH YN
Sbjct: 531 EHTHENSQEHHHEHNHNHDHIHKYN 555


>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
           translocase complex subunit Tim21 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 292 LLFFDHTLSPRQQH 251
           ++ FDHT S RQQH
Sbjct: 194 IIIFDHTNSVRQQH 207


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 184 EYLFLYRYYINVYNLYCIEMMHSV 255
           +Y+FL   Y NV N+Y     H V
Sbjct: 695 QYIFLSIMYTNVLNVYAFCNTHDV 718


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,214,583
Number of Sequences: 5004
Number of extensions: 19583
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)