Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10636X
(376 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_5256| Best HMM Match : EGF_2 (HMM E-Value=5.1) 27 5.0
SB_55690| Best HMM Match : AAA (HMM E-Value=0) 26 8.7
SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
>SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 163 GINLVCR-EYLFLYRYYINVYNLY 231
G N V R YL +Y YY++VYN Y
Sbjct: 533 GQNSVARLNYLDVYNYYLDVYNYY 556
Score = 27.1 bits (57), Expect = 5.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 187 YLFLYRYYINVYNLY 231
YL +Y YY++VYN Y
Sbjct: 556 YLDIYNYYLDVYNYY 570
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 187 YLFLYRYYINVYNLY 231
YL +Y YY++VYN Y
Sbjct: 563 YLDVYNYYLDVYNYY 577
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 187 YLFLYRYYINVYNLY 231
YL +Y YY++VYN Y
Sbjct: 570 YLDVYNYYLDVYNYY 584
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 187 YLFLYRYYINVYNLY 231
YL +Y YY++VYN Y
Sbjct: 577 YLDVYNYYLDVYNYY 591
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 187 YLFLYRYYINVYNLY 231
YL +Y YY++VYN Y
Sbjct: 584 YLDVYNYYLDVYNYY 598
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 187 YLFLYRYYINVYNLY 231
YL +Y YY++VYN Y
Sbjct: 591 YLDVYNYYLDVYNYY 605
Score = 26.2 bits (55), Expect = 8.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 187 YLFLYRYYINVYNLY 231
YL +Y YY+++YN Y
Sbjct: 549 YLDVYNYYLDIYNYY 563
>SB_5256| Best HMM Match : EGF_2 (HMM E-Value=5.1)
Length = 122
Score = 27.1 bits (57), Expect = 5.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 187 YLFLYRYYINVYNLY 231
YL +Y YY++VYN Y
Sbjct: 19 YLDIYNYYLDVYNYY 33
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 187 YLFLYRYYINVYNLY 231
YL +Y YY++VYN Y
Sbjct: 5 YLDVYNYYLDVYNYY 19
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 187 YLFLYRYYINVYNLY 231
YL +Y YY++VYN Y
Sbjct: 26 YLDVYNYYLDVYNYY 40
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 187 YLFLYRYYINVYNLY 231
YL +Y YY++VYN Y
Sbjct: 33 YLDVYNYYLDVYNYY 47
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 187 YLFLYRYYINVYNLY 231
YL +Y YY++VYN Y
Sbjct: 40 YLDVYNYYLDVYNYY 54
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 187 YLFLYRYYINVYNLY 231
YL +Y YY++VYN Y
Sbjct: 47 YLDVYNYYLDVYNYY 61
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 187 YLFLYRYYINVYNLY 231
YL +Y YY++VYN Y
Sbjct: 54 YLDVYNYYLDVYNYY 68
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 187 YLFLYRYYINVYNLY 231
YL +Y YY++VYN Y
Sbjct: 61 YLDVYNYYLDVYNYY 75
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 187 YLFLYRYYINVYNLY 231
YL +Y YY++VYN Y
Sbjct: 68 YLDVYNYYLDVYNYY 82
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 187 YLFLYRYYINVYNLY 231
YL +Y YY++VYN Y
Sbjct: 75 YLDVYNYYLDVYNYY 89
Score = 26.2 bits (55), Expect = 8.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 187 YLFLYRYYINVYNLY 231
YL +Y YY+++YN Y
Sbjct: 12 YLDVYNYYLDIYNYY 26
>SB_55690| Best HMM Match : AAA (HMM E-Value=0)
Length = 1031
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -1
Query: 322 FTRN*KADPTLLFFDH--TLSPRQQH 251
FTR A P +LFFD +L+PR+ H
Sbjct: 753 FTRAQSAKPCILFFDEFDSLAPRRGH 778
>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 175 VCREYL-FLYRYYINVYNLYCIEMMHSVVVEATVC 276
+CR+ L RY +VY++Y + H VV + VC
Sbjct: 231 LCRQCAPCLCRYVASVYHVYVASVHHVYVVMSPVC 265
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,204,157
Number of Sequences: 59808
Number of extensions: 147018
Number of successful extensions: 224
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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