Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10636X
         (376 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75526-2|CAA99768.2|  341|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical pr...    26   7.6  
AF101305-3|AAF98595.1|  341|Caenorhabditis elegans Serpentine re...    26   7.6  
AF022985-8|AAB69966.1|  354|Caenorhabditis elegans Hypothetical ...    26   7.6  
AC025721-3|AAM15614.1|  192|Caenorhabditis elegans Adaptin, smal...    26   7.6  

>Z75526-2|CAA99768.2|  341|Caenorhabditis elegans Hypothetical
           protein C06H2.2 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +1

Query: 181 REYLFLYRYYINVYNLYCIEMMHSVVVEATVCDQKKV 291
           REY+++ R +++    Y +    SV  E ++C+ +K+
Sbjct: 173 REYVYVRRTWVSEDEKYAVLDSESVQPEVSICNLRKI 209


>U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical
           protein T10E10.3 protein.
          Length = 393

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 91  YSTRNSYTRDQVTSVEVTCRPRAALVL 11
           YSTR  YT  QV++  VTC   A  +L
Sbjct: 299 YSTRWMYTSVQVSTTVVTCSKVANFIL 325


>AF101305-3|AAF98595.1|  341|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 1 protein.
          Length = 341

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 272 TVASTTTLCIISIQYKLYTFI*YRYKNKYSLHTKLIPH 159
           ++  TT LCI+ +   +Y+F+  +   K   ++K I H
Sbjct: 22  SLGMTTLLCILCVPCTIYSFLAIQKATKLHFNSKCIFH 59


>AF022985-8|AAB69966.1|  354|Caenorhabditis elegans Hypothetical
           protein T15B7.13 protein.
          Length = 354

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 196 LYRYYINVYNLYCIEMMHSVVVEATVCDQKKVTSGR 303
           LY Y  N  NLY   M   +VV+ T C    + S R
Sbjct: 139 LYNYLENFLNLYVPVMADYLVVQMTFCRVMALYSNR 174


>AC025721-3|AAM15614.1|  192|Caenorhabditis elegans Adaptin, small
           chain (clathrinassociated complex) protein 3 protein.
          Length = 192

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 184 EYLFLYRYYINVYNLYCIEMMHS 252
           +Y  +YR+Y  +Y ++C++   S
Sbjct: 60  DYRLIYRHYATLYFIFCVDSSES 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,747,384
Number of Sequences: 27780
Number of extensions: 107895
Number of successful extensions: 211
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)