Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10635
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    29   0.31 
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    26   2.2  
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch...    26   2.2  
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    25   5.0  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    25   5.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   5.0  
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    25   6.7  
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...    24   8.8  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    24   8.8  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 80   VFVYPYEPTPKESEPFKSVVPDNKPFGYP 166
            + VY + P   +SE F +VV DN    YP
Sbjct: 4194 ILVYQHLPDSSQSETFLNVVTDNSAVDYP 4222


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/55 (21%), Positives = 23/55 (41%)
 Frame = +2

Query: 230 VYHEGELFPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSRISCEYVKTVTNV 394
           VYH   + P   T   +  +K+N      K +    +++     +C +V  + NV
Sbjct: 303 VYHVSSINPPTETVYVVKMLKKNAAKFTGKERHLQEVSILQRLQACPFVVNLVNV 357


>SPAC25B8.15c |||wybutosine biosynthesis protein
           Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 237

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 119 EPFKSVVPDNKPFGYPFDRPVLP 187
           E  KS VPD  P G+P D P+ P
Sbjct: 19  EGLKSSVPDASPKGHP-DSPIFP 40


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = +2

Query: 278 IHQIKRNYNA-----LIRKSKRTLTITVYNSRISCEYV 376
           I Q K  YNA     ++R S R +T  + +SR++ +YV
Sbjct: 37  IAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYV 74


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = +2

Query: 278 IHQIKRNYNA-----LIRKSKRTLTITVYNSRISCEYV 376
           I Q K  YNA     ++R S R +T  + +SR++ +YV
Sbjct: 37  IAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYV 74


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 38   LPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNK 151
            L + T D   ++ ++FV+  E +P+  E   S++ DNK
Sbjct: 2232 LLRKTRDSCYYKRYMFVFDDELSPEWVEAMNSLLDDNK 2269


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 104 SVHTDRRIQTAGRGIHRMY 48
           S HT RR QT+G+  H+ Y
Sbjct: 76  SGHTKRRSQTSGKKTHQPY 94


>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +2

Query: 56  DGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGY---PFDRPVLPQYFKQPNMF 214
           +G P    VF    +  PK +  F+++    K +GY    F R V+PQ+  Q   F
Sbjct: 11  NGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHR-VIPQFMLQGGDF 65


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 141 GTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISL 28
           G+  L+ +  LG    G  +T ++   PS++PLG+ SL
Sbjct: 511 GSLSLSSNSLLG-SLGGLESTPAYPSYPSHIPLGTASL 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,585,885
Number of Sequences: 5004
Number of extensions: 31559
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)