Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10635
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0063 - 18756289-18756390,18756769-18756954,18757053-187572...    29   2.2  
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420...    28   2.9  
05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468     28   3.8  
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542...    27   8.7  

>11_05_0063 -
           18756289-18756390,18756769-18756954,18757053-18757223,
           18757339-18757383,18758087-18758260,18758801-18758887,
           18759349-18759510,18759945-18760015,18760296-18760435,
           18760828-18760952,18761329-18761463,18762069-18762314,
           18762530-18762755,18763039-18763091
          Length = 640

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 77  FVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDR 175
           F   +PYEPTP +++ F  V  D      P DR
Sbjct: 79  FTAEFPYEPTPDQNQAFIDVDKDLTERETPMDR 111


>04_04_1457 -
           33741048-33741146,33741647-33741760,33741938-33742052,
           33742154-33742560,33743342-33743476,33743576-33743970,
           33744225-33744916,33745014-33745097,33745195-33745286,
           33745374-33745457,33745535-33745714,33746258-33746302,
           33746399-33746692,33747199-33747585,33747713-33747899,
           33748042-33748118,33748936-33749067,33749315-33749416,
           33749744-33749827,33749902-33749992,33750105-33750178,
           33750644-33750664,33751433-33751477,33752427-33752561,
           33752693-33752752
          Length = 1376

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 117 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 1
           D +G G+YG         N  +V +  +SLE I  E+LN
Sbjct: 24  DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIPQEDLN 62


>05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468
          Length = 898

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 22/66 (33%), Positives = 28/66 (42%)
 Frame = +2

Query: 32  LMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNM 211
           + LP G YD F +Q F   Y + P      PF S +P        FDR     Y      
Sbjct: 150 VFLPAGLYDRF-YQHFCKGYLW-PLFHYMLPFASALPAAASGDGRFDRGAWEAYVLANKY 207

Query: 212 FFKKVL 229
           FF+KV+
Sbjct: 208 FFEKVV 213


>03_02_0071 +
           5425722-5427154,5427259-5427464,5428445-5428686,
           5428788-5429570
          Length = 887

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 22/69 (31%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
 Frame = +2

Query: 17  TMPSRLMLPKGTYDGFPFQLFVFVYPYEP------TPKESEPFKSVVPDNKPFGYPFDRP 178
           T  SR  LP  T D FP    +   P  P      TP  +       PD K    P  RP
Sbjct: 283 TTASRRSLPSMTSDFFPPVAAIAAPPAPPPARSRRTPPRTRFSTGSTPDTKQVTSPSPRP 342

Query: 179 VLPQYFKQP 205
           V P     P
Sbjct: 343 VQPSNAPPP 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,650,988
Number of Sequences: 37544
Number of extensions: 183174
Number of successful extensions: 438
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)