Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10635
(435 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.95
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.95
SB_38453| Best HMM Match : Sulfatase (HMM E-Value=3.1e-06) 29 1.3
SB_27062| Best HMM Match : DUF497 (HMM E-Value=4.9) 28 2.9
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_55443| Best HMM Match : Homeobox (HMM E-Value=2.3e-26) 27 5.0
SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16) 27 6.7
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_28375| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_36484| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 29.9 bits (64), Expect = 0.95
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 8 SSDTMPSRLMLPKGTYDGFPFQLFV--FVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPV 181
+++T P+ +++P GT ++ + PY P P + P S GYP P
Sbjct: 93 NTETSPNAVIIPPGTDPQLANLVYPPPSMAPYPPGPNQGTPPPSTQQQPGSGGYPMMYPQ 152
Query: 182 LPQYF 196
P Y+
Sbjct: 153 QPGYY 157
>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 29.9 bits (64), Expect = 0.95
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 23 PSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYP 166
PS ++ P+ Y G+PFQ YP P P F + P + P YP
Sbjct: 169 PSPVLSPQ-VYRGYPFQ-----YPGTPPPPMYPAFPPIFPSSPPPEYP 210
>SB_38453| Best HMM Match : Sulfatase (HMM E-Value=3.1e-06)
Length = 473
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +2
Query: 134 VVPDNKPFGYPFDRPVLPQYFKQ----PNMFFKKVLVYHEGELFPIYLTFLTIH 283
V+ +P+G P D +LP+ KQ +M K L + E E P+Y F T +
Sbjct: 131 VIKPTEPYGLPLDFTLLPKKLKQAGYATHMVGKWHLGFFEWEYTPLYRGFDTFY 184
>SB_27062| Best HMM Match : DUF497 (HMM E-Value=4.9)
Length = 325
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 241 RRTIPYLFNIPHYTPDKAQL*CSH 312
RRT+PY I H+T KA + C+H
Sbjct: 233 RRTVPYSSRIAHFTESKA-ICCNH 255
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 92 PYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNMFFKKV 226
P+ P + +PF+SV P +PF Q +QP+ F+ V
Sbjct: 509 PFRPGQQPQQPFRSVQPPQQPFRADQQTQQPFQSGQQPHQPFRSV 553
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 92 PYEPTPKESEPFKSVVPDNKPF 157
P+ P + +PF+SV P +PF
Sbjct: 599 PFRPEQQPQQPFRSVQPPQQPF 620
>SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1460
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +2
Query: 197 KQPNMFFKKVLVYHEGELFPIYLTFLTIHQI-KRNYNALI-RKSKRTLTITVYNSRIS 364
+QP+ + K ++Y + E++PI+ + ++ R Y A + R+ + T + +++S
Sbjct: 420 EQPDPYLNKCVMYPKAEVYPIHAEECQLEEVLSRRYMARVQRRQEAARTAAMATAQVS 477
>SB_55443| Best HMM Match : Homeobox (HMM E-Value=2.3e-26)
Length = 245
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 35 MLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYP 166
+L Y G+PFQ YP P P F + P + P YP
Sbjct: 172 VLSPQVYRGYPFQ-----YPGTPPPPMYPAFPPIFPSSPPPEYP 210
>SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)
Length = 896
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 92 PYEPTPKESEPFKSVVPDNKPFGYP 166
P PTP+ S P + P +KP P
Sbjct: 130 PQHPTPQHSPPIRKQTPPSKPHPSP 154
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 104 TPKESEPFKSVVPDNKPFGYPFDRPVLP 187
T K +PF VV ++KP +P P+LP
Sbjct: 527 TTKAKQPFSVVVKESKPIPHPV-TPLLP 553
>SB_28375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 146 NKPFGYPFDRPVLPQY 193
N P GYP RP+L QY
Sbjct: 47 NPPHGYPRRRPILSQY 62
>SB_36484| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 44 KGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFK 199
+ T + P F+ V+ + P + K+ + NKP Y DRPV + F+
Sbjct: 258 EATLNNIPRNTFMEVFKTKLDPISVQMAKAQIVFNKPRLYASDRPVSKRDFR 309
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,634,745
Number of Sequences: 59808
Number of extensions: 220448
Number of successful extensions: 665
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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