Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10635
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    33   0.089
U41016-8|ABC71806.1|  212|Caenorhabditis elegans Hypothetical pr...    30   0.63 
Z68213-1|CAA92435.2|  487|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U64848-7|ABS83846.1|  144|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z68882-17|CAI79150.1|  111|Caenorhabditis elegans Hypothetical p...    27   4.4  
AL132949-37|CAB70100.3|  285|Caenorhabditis elegans Hypothetical...    27   4.4  
AL132949-4|CAB70101.2|  439|Caenorhabditis elegans Hypothetical ...    27   4.4  
Z75956-6|CAB61026.2|  472|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z75954-8|CAB61020.2|  472|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U00052-3|AAK21426.1|  308|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AJ000259-1|CAA03975.1|  472|Caenorhabditis elegans osm-6 protein.      27   7.8  

>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 33.1 bits (72), Expect = 0.089
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +2

Query: 98  EPTPK-ESEPFKSVVPDNKPFGYPFDRPV-LPQYFKQPNMFFKKVLVYHEGELFPIYLTF 271
           +PTPK +SEPF   +P +KP   PF  P+  P+   +P     K +  H+ + FP  + F
Sbjct: 7   KPTPKPKSEPFPKPMPKSKPKSEPFPSPMPFPKPMPKPKP-KPKPMPKHKPKPFPKPMLF 65



 Score = 31.5 bits (68), Expect = 0.27
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +2

Query: 83  FVYPYEPTPKESEPFKSVVPDNKPFGYPFDRP-VLPQYFKQP---NMFFKKVLVYHEGEL 250
           F  P   +  +SEPF S +P  KP   P  +P  +P++  +P    M F K +  H+ + 
Sbjct: 17  FPKPMPKSKPKSEPFPSPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPKHKPKP 76

Query: 251 FPIYLTF 271
           FP  + F
Sbjct: 77  FPKPMLF 83


>U41016-8|ABC71806.1|  212|Caenorhabditis elegans Hypothetical
           protein R11G1.2 protein.
          Length = 212

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +2

Query: 32  LMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQ-YFKQPN 208
           L++    Y G   +     Y    T  +S+ F   VP  KP GY  D P+ P+ Y     
Sbjct: 91  LLMDSDEYCGLSIENVYTRYITSETIDQSDTFGYNVP--KPIGYKGDEPIWPRSYGYSAE 148

Query: 209 MFFKKVLVYHEGELFPIY 262
           MFF +      G  FP++
Sbjct: 149 MFFDE-----NGAAFPVH 161


>Z68213-1|CAA92435.2|  487|Caenorhabditis elegans Hypothetical
           protein C01F6.2 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 104 TPKESEPFKSVVPDNKPFGYPFDRPVLPQ 190
           TPK  +  +  VP N+P    F RPV+P+
Sbjct: 128 TPKTPDVIRQKVPMNEPVNCVFIRPVIPK 156


>U64848-7|ABS83846.1|  144|Caenorhabditis elegans Hypothetical
           protein C50E3.11 protein.
          Length = 144

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +2

Query: 113 ESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNMFFKKVLVYHEGELFPIY 262
           E EP  S   D KP  Y F  P + Q    PN   KK L+  EG  + +Y
Sbjct: 60  ELEPTVSHWLDRKPLMYDFQFPCILQICLVPNA--KKKLIDFEGICYILY 107


>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 287 IKRNYNALIRKSKRTLTITVYNSRISCEYVKTVTNVI 397
           I RN         + +T  V NS + C + +TVTN++
Sbjct: 21  IPRNLTCGHALCHKCITAMVNNSTVECPFCRTVTNIV 57


>Z68882-17|CAI79150.1|  111|Caenorhabditis elegans Hypothetical
           protein C47E12.14 protein.
          Length = 111

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 317 KSKRTLTITVYNSRISCEYVKTVTNV 394
           KSK TL   ++ +R+S ++VKT  NV
Sbjct: 58  KSKFTLAQPIFKNRMSADFVKTHKNV 83


>AL132949-37|CAB70100.3|  285|Caenorhabditis elegans Hypothetical
           protein Y53F4B.4a protein.
          Length = 285

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -3

Query: 283 VYSEEC*IDRE*FSFMVDQDLLEEHVRLFEVLRKNGAIEW 164
           VYS  C +  E    +VD+ LL+ +VR   VL+KN   EW
Sbjct: 208 VYST-CSVHEEENEQVVDEVLLDTYVRQNYVLKKNVLPEW 246


>AL132949-4|CAB70101.2|  439|Caenorhabditis elegans Hypothetical
           protein Y53F4B.4b protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -3

Query: 283 VYSEEC*IDRE*FSFMVDQDLLEEHVRLFEVLRKNGAIEW 164
           VYS  C +  E    +VD+ LL+ +VR   VL+KN   EW
Sbjct: 362 VYST-CSVHEEENEQVVDEVLLDTYVRQNYVLKKNVLPEW 400


>Z75956-6|CAB61026.2|  472|Caenorhabditis elegans Hypothetical
           protein R31.3 protein.
          Length = 472

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = +2

Query: 71  QLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNMFFKKVLVYHEGEL 250
           Q   F+YPY  T   +    +VV  +    +P  RPV   +  + N   KK  V   G +
Sbjct: 163 QALSFIYPYGCTLDVNNRMSNVVLSSGSTSFPTSRPVAAFHETKLNEMKKKGRVCVVGSV 222

Query: 251 FPIYLTFL 274
              + T++
Sbjct: 223 SMFHDTYI 230


>Z75954-8|CAB61020.2|  472|Caenorhabditis elegans Hypothetical
           protein R31.3 protein.
          Length = 472

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = +2

Query: 71  QLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNMFFKKVLVYHEGEL 250
           Q   F+YPY  T   +    +VV  +    +P  RPV   +  + N   KK  V   G +
Sbjct: 163 QALSFIYPYGCTLDVNNRMSNVVLSSGSTSFPTSRPVAAFHETKLNEMKKKGRVCVVGSV 222

Query: 251 FPIYLTFL 274
              + T++
Sbjct: 223 SMFHDTYI 230


>U00052-3|AAK21426.1|  308|Caenorhabditis elegans Hypothetical
           protein K02F3.4 protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 92  PYEPTPKESE-PFKSVVPDNKPFGYPFDRPVLPQYF 196
           P   TP+ S   F+  VP+   F Y FD P +P+ F
Sbjct: 110 PNMSTPQASHGSFEFDVPEYTSFDYAFDFPPVPEAF 145


>AJ000259-1|CAA03975.1|  472|Caenorhabditis elegans osm-6 protein.
          Length = 472

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = +2

Query: 71  QLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNMFFKKVLVYHEGEL 250
           Q   F+YPY  T   +    +VV  +    +P  RPV   +  + N   KK  V   G +
Sbjct: 163 QALSFIYPYGCTLDVNNRMSNVVLSSGSTSFPTSRPVAAFHETKLNEMKKKGRVCVVGSV 222

Query: 251 FPIYLTFL 274
              + T++
Sbjct: 223 SMFHDTYI 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,652,296
Number of Sequences: 27780
Number of extensions: 172483
Number of successful extensions: 515
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)