Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10633X
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    28   0.44 
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   1.3  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    26   1.8  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   4.1  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         24   5.4  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    24   5.4  
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    23   9.4  

>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 27.9 bits (59), Expect = 0.44
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 307 IFSLYIKVLQEFVCGLFINSFHLFIYYLII 218
           + +  I  L   +CG  +N F +FIYYL I
Sbjct: 566 LIAFTILFLVGLICGWRLNRFTMFIYYLCI 595


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 245 SFIHLLSNYLFTNKKY*TESCLRAYVHTQSCQY 147
           S+  LL  Y  TN  Y   SCLRA+  T+  +Y
Sbjct: 726 SWDQLLEIYTKTNDPYVRNSCLRAFGVTEDEKY 758


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = -2

Query: 148 IMWYRYLE*VRLRVINLEQLLR 83
           ++W RY++ + ++ +++EQ LR
Sbjct: 255 VVWTRYVKKIEMKAVSIEQCLR 276


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 61  RRTVTSQTYERRRHPQPP 8
           RRT T  T+ R R+P+ P
Sbjct: 48  RRTSTDTTHSRHRYPETP 65


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 259 FINSFHLFIYYLIIYL 212
           F+ S H  +YYL IYL
Sbjct: 83  FLYSLHRCVYYLFIYL 98


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 118  RLRVINLEQLLRHVTWLVPRRTVTSQTYERRRHPQPP 8
            RLR I+L +  + V    P + +TS+T E+   P PP
Sbjct: 1111 RLRAIHLGKG-KIVIKKAPLKQITSKTKEKSTSPTPP 1146


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 229 YLIIYLQTKSIEQSPVYVRMYTHSPVNIMWYRY 131
           Y +I + T  IE+S      ++H P+N   ++Y
Sbjct: 181 YHLIKILTSLIEESKRNAEKFSHVPLNTGHWKY 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,410,443
Number of Sequences: 5004
Number of extensions: 27014
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)