Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10633X
         (335 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0571 + 23353319-23354293,23354431-23354574,23354684-23355052     29   0.71 
06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518     27   2.9  
06_03_0609 + 22710442-22713502,22713596-22713948                       27   3.8  
03_03_0036 + 13980923-13981504,13982672-13983208                       27   5.0  
10_08_0168 - 15379897-15380819,15381306-15381894                       26   6.6  
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112     26   6.6  
06_03_0257 + 18846638-18846850,18846934-18847689                       26   8.7  

>01_05_0571 + 23353319-23354293,23354431-23354574,23354684-23355052
          Length = 495

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 143 HDIDRTVCVHTHVNRTLFNTF 205
           HD+    C+H+HVN+ +F+ F
Sbjct: 390 HDVGPIECLHSHVNKVVFHMF 410


>06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518
          Length = 524

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 284 LTGIRVWFIHKFFSFIHLLSNY 219
           +T  + W++HKF   +  LSNY
Sbjct: 266 ITNFKPWWVHKFTPLLKKLSNY 287


>06_03_0609 + 22710442-22713502,22713596-22713948
          Length = 1137

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 78  TCLSSCSKLITRRRTYSKYLYHMILTGLCVYIRT*TGLCSILFVC 212
           T +  CSKL+ ++R +S+ L  ++   + +   T T LC    +C
Sbjct: 748 TGMPLCSKLVDKKRNHSRSLVLVLTIVIPIVAITFTLLCLAKIIC 792


>03_03_0036 + 13980923-13981504,13982672-13983208
          Length = 372

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 211 QTKSIEQSPVYVRMYTHSPVNIMWYRYL 128
           QT  + +  +Y    TH    + W+RYL
Sbjct: 215 QTAKLLEDVIYPEEITHCAAGVRWFRYL 242


>10_08_0168 - 15379897-15380819,15381306-15381894
          Length = 503

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 173 YVHTQSCQYHVVQVLGISSSSGYQFRATAKA 81
           +V T+S      + LG++  SGY   A A+A
Sbjct: 49  FVSTESVHEQTARALGVADPSGYDVFAAARA 79


>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
          Length = 1372

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 84  LSSCSKLITRRRTYSKYLYHMILTGLC 164
           L  C K++TR      Y Y ++L G C
Sbjct: 669 LDLCEKMVTRNILPDTYTYTILLDGFC 695


>06_03_0257 + 18846638-18846850,18846934-18847689
          Length = 322

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 265 GLFINSFHLFIYYLIIYLQTKSIEQSPVYVR 173
           GLF+ SF LF+   + +      E SP Y +
Sbjct: 6   GLFVASFTLFLLVALAFADESRPELSPAYYK 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,715,457
Number of Sequences: 37544
Number of extensions: 152729
Number of successful extensions: 351
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)