Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10633X
         (335 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26689| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.6  
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   27   3.8  
SB_15004| Best HMM Match : zf-DHHC (HMM E-Value=2.7e-27)               27   3.8  
SB_42415| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_37947| Best HMM Match : SAP (HMM E-Value=8e-07)                     27   5.0  
SB_50960| Best HMM Match : Pkinase (HMM E-Value=0)                     27   5.0  
SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_46033| Best HMM Match : Phage_integrase (HMM E-Value=0.022)         26   6.6  
SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24)                  26   6.6  
SB_43900| Best HMM Match : ResIII (HMM E-Value=0.53)                   26   6.6  
SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)                    26   6.6  
SB_20633| Best HMM Match : Toxin_13 (HMM E-Value=0.13)                 26   6.6  
SB_16283| Best HMM Match : Pox_A32 (HMM E-Value=0.012)                 26   8.7  
SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01)                  26   8.7  

>SB_26689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 241  LFIYYLIIYLQTKSIEQSPVYVRMYTHSPVNIMWYRYLE*VRLRVINL 98
            LF+ YL + L  K I  S +YV MY       +WY +L+ + + ++ L
Sbjct: 907  LFLAYLNVLLYIKGIGSSGLYVTMYFE-----VWYSFLKVITVFLVVL 949


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 163 HSPVNIMWYRYLE*VRLRVINLEQLLRHVTWLV-PRRTVTSQTYERRRHPQP 11
           H P+  ++  + E   LRV  +   L+   +L+ P RT+ ++     RHP+P
Sbjct: 798 HKPLVPLFSGHRETAPLRVDRMRLRLQGFNYLIHPARTLYNEADYNSRHPEP 849


>SB_15004| Best HMM Match : zf-DHHC (HMM E-Value=2.7e-27)
          Length = 559

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -2

Query: 307 IFSLYIKVLQEFVCGLFINSFHLFIYYLIIYLQT 206
           IF+L++ VL   + G+F+  F +F +YL++  QT
Sbjct: 427 IFTLFMVVL---IFGIFLTLFTIFHFYLLLTNQT 457


>SB_42415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 331 LSSGAKDQIFSLYIKVLQEFVCGLFINSFHLF 236
           L  G+ +++   Y +V   ++CG  IN  H+F
Sbjct: 599 LDDGSCNEVLCKYCRVYFCWICGEVINGLHIF 630


>SB_37947| Best HMM Match : SAP (HMM E-Value=8e-07)
          Length = 389

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 102 LITRRRTYSKYLYHMILTGLCVY 170
           LIT  R Y KYL  +++   CVY
Sbjct: 139 LITTSRPYRKYLLDVVVCRTCVY 161


>SB_50960| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 632

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 244 HLFIYYLIIYLQTKSIEQSPVYVRMYTH 161
           +L  YY + YLQ K +E+ PV  + + H
Sbjct: 60  YLDSYYFLRYLQWKWLERQPVTKKTFRH 87


>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 48  VTVLRGTNHVTCLSSCSKLI 107
           VT L+G   +T L SCSKLI
Sbjct: 604 VTALQGGTTITTLPSCSKLI 623


>SB_46033| Best HMM Match : Phage_integrase (HMM E-Value=0.022)
          Length = 645

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 146 HVVQVLGISSSSGYQFRATAKARHMVGTS 60
           H+VQ LG   S  YQF     A  +VG S
Sbjct: 610 HLVQTLGRWRSGAYQFYICTPASALVGAS 638


>SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24)
          Length = 1497

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 7    PEAADVGVVRRFVTSLFYEVPTM 75
            PEA  +G++ RFV++LF    T+
Sbjct: 1025 PEAGQIGILLRFVSALFEGTNTL 1047


>SB_43900| Best HMM Match : ResIII (HMM E-Value=0.53)
          Length = 540

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 110 PKTNLFQVPVPHDIDRTVCVHTHV 181
           PKT+++  P    +D   CVH H+
Sbjct: 391 PKTSVYHRPQLRGLDHECCVHRHL 414


>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1238

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 17/87 (19%), Positives = 43/87 (49%)
 Frame = -2

Query: 292 IKVLQEFVCGLFINSFHLFIYYLIIYLQTKSIEQSPVYVRMYTHSPVNIMWYRYLE*VRL 113
           + V+ + +   F+NSF+  +  +++YL   +++  P   R  T++ + ++        +L
Sbjct: 88  LSVIAKLLYLRFLNSFYTMMLVVMLYLYLDALQTGP--ARDLTYTKLCLVGLCASTFFKL 145

Query: 112 RVINLEQLLRHVTWLVPRRTVTSQTYE 32
             ++ E L+  +T +  +  VT   Y+
Sbjct: 146 FTLHHEHLISSLTEMRLKNAVTGIVYK 172


>SB_20633| Best HMM Match : Toxin_13 (HMM E-Value=0.13)
          Length = 225

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 45  DVTVLRGTNHVTCLSSCSKLITRRRTYSKY 134
           D  V  G  +  C+S CSKL T R  + K+
Sbjct: 191 DCAVACGKLNANCMSQCSKLRTGRGLHYKF 220


>SB_16283| Best HMM Match : Pox_A32 (HMM E-Value=0.012)
          Length = 410

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 7   PEAADVGVVRRFVTSLFYEVPTM 75
           PEA  + +++RFV++LF  + T+
Sbjct: 67  PEAGQIDILQRFVSALFEGINTL 89


>SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01)
          Length = 1062

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 7   PEAADVGVVRRFVTSLFYEVPTM 75
           PEA  + +++RFV++LF  + T+
Sbjct: 440 PEAGQIDILQRFVSALFEGINTL 462


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,658,215
Number of Sequences: 59808
Number of extensions: 201219
Number of successful extensions: 626
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)