Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10633X
(335 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF078788-3|AAC26966.1| 547|Caenorhabditis elegans Hypothetical ... 28 1.4
AL032623-14|CAA21518.1| 593|Caenorhabditis elegans Hypothetical... 28 1.9
AF067211-16|AAC16988.3| 399|Caenorhabditis elegans Hypothetical... 27 2.5
Z69793-4|CAA93675.3| 382|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p... 27 3.3
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z68213-2|CAA92437.1| 388|Caenorhabditis elegans Hypothetical pr... 26 5.8
X64963-1|CAA46126.1| 388|Caenorhabditis elegans protein ( C.ele... 26 5.8
X64962-1|CAA46125.1| 388|Caenorhabditis elegans sex determinati... 26 5.8
U29378-4|AAA68727.2| 667|Caenorhabditis elegans Temporarily ass... 26 5.8
U55365-2|AAA98568.1| 184|Caenorhabditis elegans Hypothetical pr... 26 7.7
U41746-1|AAA83330.3| 347|Caenorhabditis elegans Seven tm recept... 26 7.7
>AF078788-3|AAC26966.1| 547|Caenorhabditis elegans Hypothetical
protein ZC190.6 protein.
Length = 547
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -1
Query: 329 FIRSKRSDLFLVHKSLTGIRVWFIHKFFSFIHLLSNYLFTNKKY*TESCLRAYVHTQSCQ 150
F+ K++ + S+ GI F+H+F + LS +LF+ ++ C AY +
Sbjct: 64 FLFEKQTYYHIYFVSVRGITWRFLHEFGYSLQSLSLFLFSIERLIASLCPTAYRSFKIRI 123
Query: 149 YHVVQVLG-ISSSSGYQF 99
+ + +LG I S G+ +
Sbjct: 124 WFIFSLLGSIIISIGFSY 141
>AL032623-14|CAA21518.1| 593|Caenorhabditis elegans Hypothetical
protein Y43F8B.14 protein.
Length = 593
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 109 VINLEQLLRHVTWLVPRRTVTSQTYER 29
V N+EQ L+HVT L PR +S YE+
Sbjct: 425 VKNMEQFLKHVTMLFPR---SSNDYEK 448
>AF067211-16|AAC16988.3| 399|Caenorhabditis elegans Hypothetical
protein B0205.4 protein.
Length = 399
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 114 RRTYSKYLYHMILTGLCVYI 173
R + ++ LYH I GLCVYI
Sbjct: 3 RFSVTRSLYHSIFIGLCVYI 22
>Z69793-4|CAA93675.3| 382|Caenorhabditis elegans Hypothetical
protein R03A10.5 protein.
Length = 382
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2
Query: 139 YRYLE*VRLRVINLEQLLRHV 77
Y LE +R R+++LEQ+L HV
Sbjct: 117 YSILEVMRARMVDLEQMLHHV 137
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 27.1 bits (57), Expect = 3.3
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Frame = -2
Query: 232 YYLIIYLQTKSIEQSPVYVRMYTH---SPVNIMWYRYLE*VRLRVINLEQLL------RH 80
+++II + K + S + + Y H + ++ MW + LRV+N E LL R+
Sbjct: 1754 FWIIISVDYKDHQISVHFCQRYEHQHTAMLDQMWAGIRQ--ELRVLNQESLLEMMYIQRN 1811
Query: 79 VT-WLVPRRTVTSQTYERRRHPQPP 8
V LVP SQ E +H PP
Sbjct: 1812 VDKLLVPEHRKISQFDENDKHQSPP 1836
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 27.1 bits (57), Expect = 3.3
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Frame = -2
Query: 232 YYLIIYLQTKSIEQSPVYVRMYTH---SPVNIMWYRYLE*VRLRVINLEQLL------RH 80
+++II + K + S + + Y H + ++ MW + LRV+N E LL R+
Sbjct: 1754 FWIIISVDYKDHQISVHFCQRYEHQHTAMLDQMWAGIRQ--ELRVLNQESLLEMMYIQRN 1811
Query: 79 VT-WLVPRRTVTSQTYERRRHPQPP 8
V LVP SQ E +H PP
Sbjct: 1812 VDKLLVPEHRKISQFDENDKHQSPP 1836
>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 27.1 bits (57), Expect = 3.3
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = -2
Query: 244 HLFIYYLI---IYLQTKSIEQSPVYVRMYTHSPVNIMWYRYLE*VRLRVINLEQLLRHVT 74
HLF Y L ++++ + Q +Y + T N + + L V VI + L+H
Sbjct: 665 HLFDYILFNPKLWIRARPEVQVHLYQYLATDFLANNNFSQMLRRVPT-VIEMCHTLKHFY 723
Query: 73 WLVPRRTVTSQTYERR 26
WL +TV+ T E R
Sbjct: 724 WLALPQTVSDYTIEER 739
>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 27.1 bits (57), Expect = 3.3
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = -2
Query: 244 HLFIYYLI---IYLQTKSIEQSPVYVRMYTHSPVNIMWYRYLE*VRLRVINLEQLLRHVT 74
HLF Y L ++++ + Q +Y + T N + + L V VI + L+H
Sbjct: 665 HLFDYILFNPKLWIRARPEVQVHLYQYLATDFLANNNFSQMLRRVPT-VIEMCHTLKHFY 723
Query: 73 WLVPRRTVTSQTYERR 26
WL +TV+ T E R
Sbjct: 724 WLALPQTVSDYTIEER 739
>Z68213-2|CAA92437.1| 388|Caenorhabditis elegans Hypothetical
protein C01F6.4 protein.
Length = 388
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 103 NLEQLLRHVTWLVPRRTVTSQTYERRRH 20
N ++ H T++VPR T S+ Y RR H
Sbjct: 228 NEDESKYHTTFVVPRGTEFSKFYARRFH 255
>X64963-1|CAA46126.1| 388|Caenorhabditis elegans protein (
C.elegans gene fem-3. ).
Length = 388
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 103 NLEQLLRHVTWLVPRRTVTSQTYERRRH 20
N ++ H T++VPR T S+ Y RR H
Sbjct: 228 NEDESKYHTTFVVPRGTEFSKFYARRFH 255
>X64962-1|CAA46125.1| 388|Caenorhabditis elegans sex determination
protein protein.
Length = 388
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 103 NLEQLLRHVTWLVPRRTVTSQTYERRRH 20
N ++ H T++VPR T S+ Y RR H
Sbjct: 228 NEDESKYHTTFVVPRGTEFSKFYARRFH 255
>U29378-4|AAA68727.2| 667|Caenorhabditis elegans Temporarily
assigned gene nameprotein 197 protein.
Length = 667
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 290 KSLTGIRVWFIHKFFSFIHLLSNY 219
K++ +R W + K F F LSNY
Sbjct: 201 KAVVKVREWLLQKMFQFRKPLSNY 224
>U55365-2|AAA98568.1| 184|Caenorhabditis elegans Hypothetical
protein C12D5.4 protein.
Length = 184
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 311 SDLFL-VHKSLTGIRVWFIHKFFSFIHLLSNYLF 213
SD+F+ + S++ I + F+H FSF+ + LF
Sbjct: 26 SDVFVPISNSISSIHLIFLHDHFSFLFSHQDILF 59
>U41746-1|AAA83330.3| 347|Caenorhabditis elegans Seven tm receptor
protein 177 protein.
Length = 347
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -2
Query: 307 IFSLYIKVLQEFVCGLFINSFHLFIYYLIIYLQTKSI---EQSPVYVRMY 167
+F+ ++K Q FV N ++F+ YLI+ +K I + +YV +Y
Sbjct: 5 VFNSFLKTAQ-FVGTCIANPLNIFLIYLILTKSSKKIGNYKYLMIYVSIY 53
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,865,580
Number of Sequences: 27780
Number of extensions: 152836
Number of successful extensions: 419
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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