Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10633X
         (335 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to ...    27   3.1  
At5g11520.1 68418.m01344 aspartate aminotransferase, chloroplast...    26   5.4  
At3g22530.1 68416.m02847 expressed protein contains Pfam profile...    26   7.2  
At5g52050.1 68418.m06460 MATE efflux protein-related contains Pf...    25   9.5  
At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOA...    25   9.5  

>At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 236

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 268 CGLFINSFHLFIYYLIIYLQTKSIEQSPVYVRMYT 164
           CG  ++ F   ++ + + ++TKS+E  P Y+ + T
Sbjct: 144 CGSLVSMFASPLFVINLVIRTKSVEFMPFYLSLST 178


>At5g11520.1 68418.m01344 aspartate aminotransferase, chloroplast /
           transaminase A (ASP3) (YLS4) identical to SP|P46644
           Aspartate aminotransferase, chloroplast precursor (EC
           2.6.1.1) (Transaminase A) {Arabidopsis thaliana};
           identical to cDNA YLS4 mRNA for aspartate
           aminotransferase (ASP3), partial cds GI:13122285
          Length = 449

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 122 SSSSGYQFRATAKARHMVGTS*NSDVTNLRTTPTSAASG 6
           SSSS    R  A  RH+   S + ++++L  +PTS  +G
Sbjct: 7   SSSSSSDRRIGALLRHLNSGSDSDNLSSLYASPTSGGTG 45


>At3g22530.1 68416.m02847 expressed protein contains Pfam
           profile:PF00011 HSP20:Hsp20/alpha crystallin family
          Length = 198

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 101 IDNPKTNLFQV-PVPHDIDRTVCVHTHVNRT 190
           ID P     +V P+P +I+ T+  H H N T
Sbjct: 24  IDKPNPEAMRVHPIPRNINNTLIHHHHHNPT 54


>At5g52050.1 68418.m06460 MATE efflux protein-related contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 505

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 54  VLRGTNHVTCLSSC-SKLITRRRTYSKYLYHMILTGLCVYIRT 179
           +L+ T+H+   SS  S  +    +  K  Y ++LTGL +Y+R+
Sbjct: 15  LLQKTSHLKNHSSVLSVFLNEAISICKISYPLVLTGLFLYVRS 57


>At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOAT)
           family protein low similarity to skinny hedgehog
           [Drosophila melanogaster] GI:15420842; contains Pfam
           profile PF03062: MBOAT family
          Length = 533

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 244 HLFIYYLIIYLQTKSIEQSPVYVRMYTHSPVNIMWYRYL 128
           HLF YY    +     E SPV + +  +  +N MW ++L
Sbjct: 306 HLF-YYNAFVISGLWRELSPVEIFIVGYGVLNFMWLKFL 343


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,191,903
Number of Sequences: 28952
Number of extensions: 130403
Number of successful extensions: 315
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)