Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10631
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   136   8e-33
11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458     28   2.4  
01_06_1377 + 36764461-36765339                                         28   2.4  
08_02_1601 - 28138206-28138597,28138928-28139054,28139150-281399...    27   4.1  
09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832     27   7.2  
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486...    27   7.2  
04_01_0268 - 3585907-3588086,3590167-3590326                           26   9.5  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  136 bits (328), Expect = 8e-33
 Identities = 57/83 (68%), Positives = 71/83 (85%)
 Frame = +1

Query: 7   MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 186
           MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+ 
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 187 MFQLPKLYAKLHYCVSCAIHSKV 255
            + LPKLYAK+H+CVSCAIH+ +
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHI 83


>11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458
          Length = 619

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 181 YPMFQLPKLYAKLHYCVSCAIHSKVSGTDRR 273
           YP  +L K    L Y    A+HS +SGT+ R
Sbjct: 344 YPKSELDKARGSLTYSFRYAMHSVISGTELR 374


>01_06_1377 + 36764461-36765339
          Length = 292

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +3

Query: 183 PNVPAP*VIR*APLLRVMRHPQQSVRNRSKKDRRIRTPPKSNFPRDMSRP 332
           P+ PA  +I   PLLR    PQ  +R R     R   PP+  +P   S P
Sbjct: 121 PDSPASALIT-LPLLRPSGRPQGKLRIRLALRERSPPPPEPQYPPPSSSP 169


>08_02_1601 -
           28138206-28138597,28138928-28139054,28139150-28139914,
           28140714-28140929,28141433-28141903
          Length = 656

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 174 GIVNISDRRRFYDVPNHELFDSLVLWHAPRAVCASHSFN--VTTSMLGASSIT 22
           GI  + D   +YD  +  LF+ L+    P A  +SH+F+  V T  +  S+ T
Sbjct: 439 GIDMVDDGMPYYDAMDDNLFNDLLSSVQPSAGSSSHAFSGPVLTQEVNNSTYT 491


>09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832
          Length = 433

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +1

Query: 10  TRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVR 159
           T  RR    A  G G   AV C +CA   P + A+   +   +  A   R
Sbjct: 78  TSSRRTDPPAGAGAGEDDAVACPSCAEPFPSELAVSDHLDGCLAAAGGAR 127


>05_01_0554 +
           4856131-4856605,4858051-4858098,4860611-4860792,
           4861409-4863136
          Length = 810

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 156 DRRRFYDVPNHELFD 112
           DR  FYD PN+E FD
Sbjct: 354 DRTLFYDEPNYEAFD 368


>04_01_0268 - 3585907-3588086,3590167-3590326
          Length = 779

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 251 LLWMAHDTQ*WSLAYNLGSWNIGYT 177
           +LW+A+    W+  Y LGS ++G T
Sbjct: 100 VLWLAYQLGGWAGTYALGSMSLGRT 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,114,940
Number of Sequences: 37544
Number of extensions: 195998
Number of successful extensions: 535
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)