Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10631
(398 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0) 161 3e-40
SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08) 28 2.4
SB_47439| Best HMM Match : E6 (HMM E-Value=3.2) 27 5.6
SB_10674| Best HMM Match : E6 (HMM E-Value=3.2) 27 5.6
SB_6460| Best HMM Match : SRCR (HMM E-Value=2e-08) 27 5.6
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 27 7.4
SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0) 27 7.4
SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_37630| Best HMM Match : rve (HMM E-Value=4e-24) 26 9.8
SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
Length = 289
Score = 161 bits (390), Expect = 3e-40
Identities = 75/98 (76%), Positives = 83/98 (84%)
Frame = +1
Query: 7 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 186
MT+KR NGGR+KHGRGHVK VRCTNCARCVPKDK+IKKFVIRNIVEAAAVRDI DASVY
Sbjct: 1 MTKKRCNGGRSKHGRGHVKFVRCTNCARCVPKDKSIKKFVIRNIVEAAAVRDIADASVYE 60
Query: 187 MFQLPKLYAKLHYCVSCAIHSKVSGTDRRKTEESVLLP 300
++ LPKLY KLHYCVSCAIHSKV +R K + + P
Sbjct: 61 VYALPKLYVKLHYCVSCAIHSKVV-RNRSKEDRKIRTP 97
Score = 32.7 bits (71), Expect = 0.11
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3
Query: 255 VRNRSKKDRRIRTPP 299
VRNRSK+DR+IRTPP
Sbjct: 84 VRNRSKEDRKIRTPP 98
>SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08)
Length = 558
Score = 28.3 bits (60), Expect = 2.4
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Frame = -3
Query: 189 HWVYRGIVN------ISDRRRFYDVPNHELFDSLVLWH-APRAVCASHS 64
H+ RGI N +S+RR+F V N E D +VL H P+A C+ S
Sbjct: 441 HYGIRGIANEWFSSYLSNRRQFVSVNNSE-SDEVVLTHGVPQAKCSIQS 488
>SB_47439| Best HMM Match : E6 (HMM E-Value=3.2)
Length = 436
Score = 27.1 bits (57), Expect = 5.6
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 130 RNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVSGTDRRKTEE--SVLLPR 303
R EA +R+ + P + + + YCVSC + + S T++ +E V +PR
Sbjct: 238 RKFKEAKGIREWHCVKTLPQQEKVLVRHQTCYCVSCIVKDEDSCTNKAWLDEWKEVTIPR 297
Query: 304 VTSLGTCHVHRQ 339
GT + RQ
Sbjct: 298 D---GTVAITRQ 306
>SB_10674| Best HMM Match : E6 (HMM E-Value=3.2)
Length = 436
Score = 27.1 bits (57), Expect = 5.6
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 130 RNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVSGTDRRKTEE--SVLLPR 303
R EA +R+ + P + + + YCVSC + + S T++ +E V +PR
Sbjct: 238 RKFKEAKGIREWHCVKTLPQQEKVLVRHQTCYCVSCIVKDEDSCTNKAWLDEWKEVTIPR 297
Query: 304 VTSLGTCHVHRQ 339
GT + RQ
Sbjct: 298 D---GTVAITRQ 306
>SB_6460| Best HMM Match : SRCR (HMM E-Value=2e-08)
Length = 234
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 228 RVMRHPQQSVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 347
++ R PQ S ++ + RI PP+ + P +S+P + R
Sbjct: 182 QISRSPQISESSQISQPPRISQPPQISQPPQISQPPQISR 221
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 26.6 bits (56), Expect = 7.4
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +1
Query: 7 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 186
M ++ N K+ R + TNC +K K +NI+ + D D+S+YP
Sbjct: 1819 MLYRQNNWYYIKNSRNTEGFIPFTNCIAEDEYEKRQNKLSRQNIIRNTSFLDSMDSSIYP 1878
>SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 842
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 94 VPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKL 207
+ K K + VI + A AV D++ +VYP+F P L
Sbjct: 47 IVKKKRNEGKVIYLFIGALAVTDVSLLAVYPLFAFPVL 84
>SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 243 PQQSVRNRSKKDRRIRTPPKSN 308
PQ+ +R RSK +RI PPK+N
Sbjct: 588 PQRPLR-RSKSSKRIGRPPKTN 608
>SB_37630| Best HMM Match : rve (HMM E-Value=4e-24)
Length = 442
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 100 KDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYA--KLHYCVSCAIHSKVSGT 264
K K +KF +IV R + ++P + K+ + + +YC IH ++ GT
Sbjct: 352 KRKKKQKFKKEDIVAIQIKRPDKTSCLHPRMLIGKVVSVKESNYCTVVTIHGRIKGT 408
>SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1452
Score = 26.2 bits (55), Expect = 9.8
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 130 RNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVSGTDRRKTEE--SVLLPR 303
R + EA +R + P + + + YCVSC + + S T++ +E V +PR
Sbjct: 1283 RKLKEAKGIRKWHCVKTLPQQEKVLVRHQTCYCVSCIVKDEDSCTNKAWLDEWKEVTIPR 1342
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,209,502
Number of Sequences: 59808
Number of extensions: 207996
Number of successful extensions: 537
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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