Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10628
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    25   0.82 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   0.82 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   1.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   2.5  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   4.4  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   4.4  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +3

Query: 543 MIMDYIYCFFSLDSVLCLFKCYVGLYLFVFKLMQRINLHY 662
           ++ D + C F L S+L  F   + + + V+ L+ +  +H+
Sbjct: 228 LVEDTLPCVFFLGSILIFFIFPLAILIIVYILIAKTLMHH 267


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 625 NKYKPT*HLNRHNTESR 575
           +KYKPT HL R  TE R
Sbjct: 150 HKYKPTVHLVRVGTEPR 166


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 574 PSTQYYAYLNVTLAYICLF 630
           PS  Y  +L +TLA+ C F
Sbjct: 61  PSADYCLFLEMTLAHHCRF 79


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 573 KKNSKYNPLSSIILIVYESPKLTTCQVAVMNI 478
           +K  KY+  S ++  V ES K  T Q  ++NI
Sbjct: 353 RKRQKYHDPSQLLRHVEESDKQRTHQPFLLNI 384


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
          growth factor 4 protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 12 LYFCTFLCYGY 44
          L FCT L YGY
Sbjct: 47 LQFCTHLIYGY 57


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 549 LSSIILIVYESPKLTTCQVAVMNIFQ 472
           L ++  I+YE   +T   +AV+NI +
Sbjct: 234 LDNVDTIMYEKTNVTFVHLAVLNILR 259


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,607
Number of Sequences: 336
Number of extensions: 3464
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)