Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10628
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   4.7  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    26   6.2  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    25   8.2  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -1

Query: 543 SIILIVYESPKLTTCQVAVMNIFQCSTSEDKNNVKLTLQKNTFKDSLVVMFCLFHFNNKI 364
           ++ L VY+ P+L    +  M++  C+ S+   + KL L +  F     V F +   N   
Sbjct: 493 TLALPVYQCPRLAVDPIYHMDVSNCNPSKPTWSRKLRLLQCVFVPFAFVTFSITGGNRLY 552

Query: 363 IF 358
           I+
Sbjct: 553 IY 554


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 81  IFYLSSFYMSSKHTRNIGMYK 19
           + YL SF+ S  HTR I  Y+
Sbjct: 46  LIYLYSFFSSGVHTRGIQFYR 66


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 115 HSCNLNVSKA*H*VLYRFLQFRLFLMNLIFKLRH 216
           HSC + V +    VLY F+  ++ L +++  L+H
Sbjct: 150 HSCLIPVDQTPIKVLYVFVDIKIDLQHVVSSLKH 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,323
Number of Sequences: 5004
Number of extensions: 53225
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)