Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10628
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106573-5|AAF02104.2|  358|Caenorhabditis elegans Seven tm rece...    28   5.8  
Z81078-2|CAI79243.1|  148|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AF106573-5|AAF02104.2|  358|Caenorhabditis elegans Seven tm
           receptor protein 79 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = -1

Query: 132 IQITTMFLLFCIPSTVTIFYLSSFYMSSKHTRNIGMYKNII 10
           +++T  F + C  +++ I +   + + ++  RNIG YK ++
Sbjct: 10  LKVTNWFNIICFSTSIPINFFLLYCVVTQSGRNIGDYKTLL 50


>Z81078-2|CAI79243.1|  148|Caenorhabditis elegans Hypothetical
           protein F36H2.4 protein.
          Length = 148

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 166 FLQFRLFLMNLIFKLRHGNISKLFNVQFPFTFVDIRVMTL 285
           F+ F ++LM  I  L  G  + L+N++    FV + V TL
Sbjct: 76  FIVFSVYLMYRISSLSVGITTSLYNIEEDLNFVIVDVSTL 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,729,795
Number of Sequences: 27780
Number of extensions: 287806
Number of successful extensions: 571
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)