Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10627
         (755 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0DLJ9 Cluster: Os03g0860700 protein; n=5; Oryza sativa...    34   4.4  

>UniRef50_Q0DLJ9 Cluster: Os03g0860700 protein; n=5; Oryza sativa|Rep:
            Os03g0860700 protein - Oryza sativa subsp. japonica
            (Rice)
          Length = 1457

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +3

Query: 228  SPRNMEVNKLTNY-NNCKVVVQKINDINI*C*EGFVPFCKFRNKIYRQIVPFVYNKNLQK 404
            +PR+ +   LT+  NN + +V  +ND+     E  VP   F  KI+ QI  F+  +    
Sbjct: 1235 TPRSAKAGLLTDQGNNWQAIVNHLNDLLKTLQENCVPSI-FARKIFTQIFSFINAQLFNS 1293

Query: 405  NINIEQCCTINSERFK*HRTQVLE 476
             +   +CC+ ++  +     Q LE
Sbjct: 1294 LLVRRECCSFSNGEYVKQGLQELE 1317


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 684,705,122
Number of Sequences: 1657284
Number of extensions: 13270660
Number of successful extensions: 29348
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 27997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29340
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)