Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10627
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069...    34   0.14 
05_04_0066 + 17621532-17621619,17621658-17621820,17621864-176222...    28   9.2  

>03_06_0766 - 36106116-36106230,36106598-36106716,36106880-36106960,
            36107062-36107118,36107350-36107373,36107810-36107909,
            36107983-36108053,36108132-36108236,36108674-36108847,
            36109406-36109555,36109701-36109871,36109968-36110024,
            36110107-36110142,36110165-36110357,36110439-36110578,
            36110960-36111166,36111442-36111498,36111711-36111809,
            36112289-36112408,36112865-36113032,36113450-36113510,
            36113611-36113720,36114132-36114263,36114344-36114511,
            36115118-36115182,36115242-36115372,36115450-36115487,
            36116272-36116373,36116480-36116537,36117479-36117580,
            36117695-36117909,36118158-36118307,36118699-36118858,
            36118984-36119042,36119287-36119443,36119536-36119681,
            36121376-36121648,36122889-36122891
          Length = 1457

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +3

Query: 228  SPRNMEVNKLTNY-NNCKVVVQKINDINI*C*EGFVPFCKFRNKIYRQIVPFVYNKNLQK 404
            +PR+ +   LT+  NN + +V  +ND+     E  VP   F  KI+ QI  F+  +    
Sbjct: 1235 TPRSAKAGLLTDQGNNWQAIVNHLNDLLKTLQENCVPSI-FARKIFTQIFSFINAQLFNS 1293

Query: 405  NINIEQCCTINSERFK*HRTQVLE 476
             +   +CC+ ++  +     Q LE
Sbjct: 1294 LLVRRECCSFSNGEYVKQGLQELE 1317


>05_04_0066 +
           17621532-17621619,17621658-17621820,17621864-17622233,
           17622548-17623009
          Length = 360

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 368 LPIYFIPELTKWDKTFSTSNIDIIYFLNNHFTV 270
           +P+Y   EL K  K FS  ++  ++ LNN + V
Sbjct: 202 VPLYNEDELEKKSKLFSDHSLRYLFLLNNSYVV 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,085,720
Number of Sequences: 37544
Number of extensions: 313580
Number of successful extensions: 586
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)