Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10627
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28609| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_11950| Best HMM Match : Pentaxin (HMM E-Value=0.12)                 30   1.8  
SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_28609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 461 NTGARRIKIKMCTFNIIELLLCYFLRNC 544
           N   +R++ ++C F+ ++L LCY  RNC
Sbjct: 11  NQDKQRMENQICRFSTLDLRLCYDWRNC 38


>SB_11950| Best HMM Match : Pentaxin (HMM E-Value=0.12)
          Length = 494

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 579 VCDWIMCNTMNVQFLKK*HSNNSIM 505
           +C W+MCNT  ++   K H  N+++
Sbjct: 222 LCYWVMCNTSRLEVAMKTHDGNTVI 246


>SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 216 DTKFSPRNMEVNKLTNYNNCKVVV 287
           DT FS +NM +++   +NN KVVV
Sbjct: 280 DTCFSAKNMSIHRAKLHNNGKVVV 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,226,445
Number of Sequences: 59808
Number of extensions: 422940
Number of successful extensions: 1020
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)