Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10627
         (755 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U06632-1|AAB81550.1|  576|Homo sapiens p80-coilin protein.             30   7.8  
M58411-1|AAA36412.1|  405|Homo sapiens p80-coilin protein.             30   7.8  
BC010385-1|AAH10385.1|  576|Homo sapiens coilin protein.               30   7.8  

>U06632-1|AAB81550.1|  576|Homo sapiens p80-coilin protein.
          Length = 576

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 52  KYDCVYHDSNGTEAIKYFSPKQNK 123
           K+D VYH+ NG E ++Y   +++K
Sbjct: 526 KFDLVYHNENGAEVVEYAVTQESK 549


>M58411-1|AAA36412.1|  405|Homo sapiens p80-coilin protein.
          Length = 405

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 52  KYDCVYHDSNGTEAIKYFSPKQNK 123
           K+D VYH+ NG E ++Y   +++K
Sbjct: 355 KFDLVYHNENGAEVVEYAVTQESK 378


>BC010385-1|AAH10385.1|  576|Homo sapiens coilin protein.
          Length = 576

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 52  KYDCVYHDSNGTEAIKYFSPKQNK 123
           K+D VYH+ NG E ++Y   +++K
Sbjct: 526 KFDLVYHNENGAEVVEYAVTQESK 549


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,592,262
Number of Sequences: 237096
Number of extensions: 1902996
Number of successful extensions: 2581
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2581
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9127122082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)