Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10627
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    26   0.44 
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    26   0.44 
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    26   0.44 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.44 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.8  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              22   5.4  

>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 537 EIAHSLCCTLSNHKLWYNH 593
           EIAH+LC T    K+W+ +
Sbjct: 40  EIAHALCLTERQIKIWFQN 58


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 537 EIAHSLCCTLSNHKLWYNH 593
           EIAH+LC T    K+W+ +
Sbjct: 40  EIAHALCLTERQIKIWFQN 58


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 537 EIAHSLCCTLSNHKLWYNH 593
           EIAH+LC T    K+W+ +
Sbjct: 40  EIAHALCLTERQIKIWFQN 58


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 537 EIAHSLCCTLSNHKLWYNH 593
           EIAH+LC T    K+W+ +
Sbjct: 302 EIAHALCLTERQIKIWFQN 320


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 234 RNMEVNKLTNYNNCKVVVQKIN 299
           R+MEV K+ N++NC    Q+IN
Sbjct: 209 RHMEVIKIKNFDNCD---QRIN 227


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -2

Query: 241 IFLGENFVSQLI--CKEFTITNSQL 173
           IFL EN ++QLI  C   + TN  L
Sbjct: 90  IFLNENEINQLITECSAISDTNVHL 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,690
Number of Sequences: 438
Number of extensions: 4429
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)